1887

Abstract

A psychrophilic, Gram-negative, dark orange-pigmented bacterium, designated CL-AP4, was isolated from a culture of the green alga obtained from the Southern Ocean. Strain CL-AP4 grew optimally at 10 °C, in the presence of 3–4 % sea salts and at pH 8. 16S rRNA gene sequence analysis revealed that strain CL-AP4 belonged to the family , with KOPRI 20941 as its closest relative (97.2 % similarity). A number of chemotaxonomic characteristics supported affiliation of strain CL-AP4 with the genus , i.e. iso-C (17.2 %), iso-C (16.8 %) and iso-C 3-OH (14.9 %) were the dominant fatty acids, MK-6 was the major menaquinone and the DNA G+C content was 37.1 mol%. DNA–DNA relatedness between CL-AP4 and KOPRI 20941 was only 10 %, suggesting that they are genomically distinct species. In addition, strain CL-AP4 differed phenotypically from in its optimum growth temperature, its ability to hydrolyse starch, Tween 40 and Tween 80, and production of certain enzymes. On the basis of the results of the polyphasic analysis, strain CL-AP4 was classified in the genus as belonging to a novel species, for which the name sp. nov. is proposed; the type strain is CL-AP4 (=KCCM 90069=JCM 15445).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.006056-0
2009-06-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/59/6/1455.html?itemId=/content/journal/ijsem/10.1099/ijs.0.006056-0&mimeType=html&fmt=ahah

References

  1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J.(1990). Basic local alignment search tool. J Mol Biol 215, 403–410.[CrossRef] [Google Scholar]
  2. Barbeyron, T., Carpentier, F., L'Haridon, S., Schüler, M., Michel, G. & Amann, R.(2008). Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter. Int J Syst Evol Microbiol 58, 790–797.[CrossRef] [Google Scholar]
  3. Bruns, A., Rohde, M. & Berthe-Corti, L.(2001).Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997–2006.[CrossRef] [Google Scholar]
  4. Cho, K. H., Hong, S. G., Cho, H. H., Lee, Y. K., Chun, J. & Lee, H. K.(2008).Maribacter arcticus sp. nov., isolated from Arctic marine sediment. Int J Syst Evol Microbiol 58, 1300–1303.[CrossRef] [Google Scholar]
  5. Cole, J. R., Chai, B., Farris, R. J., Wang, Q., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Bandela, A. M., Cardenas, E., Garrity, G. M. & other authors(2007). The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res 35, D169–D172.[CrossRef] [Google Scholar]
  6. Collins, M. D.(1985). Analysis of isoprenoid quinones. Methods Microbiol 18, 329–366. [Google Scholar]
  7. Englen, M. D. & Kelley, L. C.(2000). A rapid DNA isolation procedure for the identification of Campylobacter jejuni by the polymerase chain reaction. Lett Appl Microbiol 31, 421–426.[CrossRef] [Google Scholar]
  8. Felsenstein, J.(1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.[CrossRef] [Google Scholar]
  9. Fitch, W. M.(1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406–416.[CrossRef] [Google Scholar]
  10. Guillard, R. R. L. & Ryther, J. H.(1962). Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt, and Detonula confervacea (cleve) Gran. Can J Microbiol 8, 229–239.[CrossRef] [Google Scholar]
  11. Hansen, G. H. & Sørheim, R.(1991). Improved method for phenotypical characterization of marine bacteria. J Microbiol Methods 13, 231–241.[CrossRef] [Google Scholar]
  12. Jeon, Y. S., Chung, H., Park, S., Hur, I., Lee, J. H. & Chun, J.(2005).jphydit: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences. Bioinformatics 21, 3171–3173.[CrossRef] [Google Scholar]
  13. Jukes, T. H. & Cantor, C. R.(1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21–132. Edited by H. N. Munro. New York: Academic Press.
  14. Kim, Y.-G., Choi, D. H., Hyun, S. & Cho, B. C.(2007).Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core. Int J Syst Evol Microbiol 57, 409–413.[CrossRef] [Google Scholar]
  15. Lane, D. J.(1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115–175. Edited by E. Stackebrandt & M. Goodfellow. Chichester, UK: Wiley.
  16. Lemos, M. L., Toranzo, A. E. & Barja, J. L.(1985). Modified medium for the oxidation-fermentation test in the identification of marine bacteria. Appl Environ Microbiol 49, 1541–1543. [Google Scholar]
  17. Lyman, J. & Fleming, R. H.(1940). Composition of sea water. J Mar Res 3, 134–146. [Google Scholar]
  18. Marmur, J.(1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208–218.[CrossRef] [Google Scholar]
  19. Mesbah, M., Premachandran, U. & Whitman, W. B.(1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.[CrossRef] [Google Scholar]
  20. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H.(1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233–241.[CrossRef] [Google Scholar]
  21. Morita, R. Y.(1975). Psychrophilic bacteria. Bacteriol Rev 39, 144–167. [Google Scholar]
  22. Nedashkovskaya, O. I., Kim, S. B., Han, S. K., Lysenko, A. M., Rohde, M., Rhee, M. S., Frolova, G. M., Falsen, E., Mikhailov, V. V. & other authors(2004).Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov. Int J Syst Evol Microbiol 54, 1017–1023.[CrossRef] [Google Scholar]
  23. Nedashkovskaya, O. I., Vancanneyt, M., De Vos, P., Kim, S. B., Lee, M. S. & Mikhailov, V. V.(2007).Maribacter polysiphoniae sp. nov., isolated from a red alga. Int J Syst Evol Microbiol 57, 2840–2843.[CrossRef] [Google Scholar]
  24. Ostle, A. G. & Holt, J. G.(1982). Nile blue A as fluorescent stain for poly-β-hydroxybutyrate. Appl Environ Microbiol 44, 238–241. [Google Scholar]
  25. Posada, D. & Crandall, K. A.(1998).modeltest: testing the model of DNA substitution. Bioinformatics 14, 817–818.[CrossRef] [Google Scholar]
  26. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
  27. Smibert, R. M. & Krieg, N. R.(1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
  28. Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S.(2001). Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51, 1639–1652.[CrossRef] [Google Scholar]
  29. Swofford, D. L.(1998).paup*: Phylogenetic analysis using parsimony (and other methods). Sunderland, MA: Sinauer Associates.
  30. Tamura, K., Dudley, J., Nei, M. & Kumar, S.(2007).mega4: Molecular Evolutionary Genetics Analysis (mega) software version 4.0. Mol Biol Evol 24, 1596–1599.[CrossRef] [Google Scholar]
  31. Vandamme, P., Pot, B., Gillis, M., De Vos, P., Kersters, K. & Swings, J.(1996). Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol Rev 60, 407–438. [Google Scholar]
  32. Yoon, J. H., Kang, S. J., Lee, S. Y., Lee, C. H. & Oh, T. K.(2005).Maribacter dokdonensis sp. nov., isolated from sea water off a Korean island, Dokdo. Int J Syst Evol Microbiol 55, 2051–2055.[CrossRef] [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.006056-0
Loading
/content/journal/ijsem/10.1099/ijs.0.006056-0
Loading

Data & Media loading...

Supplements

vol. , part 6, pp. 1455 – 1459

Comparison of the cellular fatty acid contents of strain CL-AP4 and phylogenetically related species in the genus [ PDF] (147 KB)



PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error