Filimonas lacunae gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from fresh water

References

1. An, D. S., Lee, H. G., Im, W. T., Liu, Q. M. & Lee, S. T.(2007).Segetibacter koreensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes, isolated from the soil of a ginseng field in South Korea. Int J Syst Evol Microbiol 57, 1828–1833.[CrossRef] [Google Scholar]
2. Bartholomew, J. W. & Mittwer, T.(1952). The Gram stain. Bacteriol Rev 16, 1–29. [Google Scholar]
3. Bowman, J. P., McCammon, S. A., Brown, M. V., Nichols, D. S. & McMeekin, T. A.(1997). Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl Environ Microbiol 63, 3068–3078. [Google Scholar]
4. Buczolits, S., Denner, E. B. M., Vybiral, D., Wieser, M., Kämpfer, P. & Busse, H.-J.(2002). Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp nov. Int J Syst Evol Microbiol 52, 445–456. [Google Scholar]
5. Fautz, E. & Reichenbach, H.(1980). A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8, 87–91.[CrossRef] [Google Scholar]
6. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
7. Galtier, N., Gouy, M. & Gautier, C.(1996).seaview and phylo_win: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12, 543–548. [Google Scholar]
8. Garrity, G. M. & Holt, J. G.(2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119–166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
9. Kämpfer, P., Young, C. C., Sridhar, K. R., Arun, A. B., Lai, W. A., Shen, F. T. & Rekha, P. D.(2006). Transfer of [Flexibacter] sancti, [Flexibacter] filiformis, [Flexibacter] japonensis and [Cytophaga] arvensicola to the genus Chitinophaga and description of Chitinophaga skermanii sp. nov. Int J Syst Evol Microbiol 56, 2223–2228.[CrossRef] [Google Scholar]
10. Kim, M. K. & Jung, H. Y.(2007).Chitinophaga terrae sp. nov., isolated from soil. Int J Syst Evol Microbiol 57, 1721–1724.[CrossRef] [Google Scholar]
11. Kimura, M.(1983).The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
12. Kumar, S., Tamura, K. & Nei, M.(2004).mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150–163.[CrossRef] [Google Scholar]
13. Lee, H. G., An, D. S., Im, W. T., Liu, Q. M., Na, J. R., Cho, D. H., Jin, C. W., Lee, S. T. & Yang, D. C.(2007).Chitinophaga ginsengisegetis sp. nov. and Chitinophaga ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea. Int J Syst Evol Microbiol 57, 1396–1401.[CrossRef] [Google Scholar]
14. Mesbah, M. & Whitman, W. B.(1989). Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine+cytosine of DNA. J Chromatogr 479, 297–306.[CrossRef] [Google Scholar]
15. Nishijima, M., Araki-Sakai, M. & Sano, H.(1997). Identification of isoprenoid quinones by frit-FAB liquid chromatography–mass spectrometry for the chemotaxonomy of microorganisms. J Microbiol Methods 28, 113–122.[CrossRef] [Google Scholar]
16. Reichenbach, H., Kohl, W., Böttger-Vetter, A. & Achenbach, H.(1980). Flexirubin-type pigments in Flavobacterium. Arch Microbiol 126, 291–293.[CrossRef] [Google Scholar]
17. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
18. Thompson, J. D., Higgins, D. G. & Gibson, T. J.(1994).clustalw: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673–4680.[CrossRef] [Google Scholar]
19. Tindall, J. B., Sikorski, J., Simbert, A. R. & Krieg, R. N.(2007). Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Microbiology, 3rd edn, pp. 330–393. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology.
20. Ueda, K., Tagami, Y., Kamihara, Y., Shiratori, H., Takano, H. & Beppu, T.(2008). Isolation of bacteria whose growth is dependent on high levels of CO₂ and implications of their potential diversity. Appl Environ Microbiol 74, 4535–4538.[CrossRef] [Google Scholar]
21. Wang, X., Hoefel, D., Saint, C. P., Monis, P. T. & Jin, B.(2007). The isolation and microbial community analysis of hydrogen producing bacteria from activated sludge. J Appl Microbiol 103, 1415–1423.[CrossRef] [Google Scholar]
22. Weon, H. Y., Kim, B. Y., Yoo, S. H., Lee, S. Y., Kwon, S. W., Go, S. J. & Stackebrandt, E.(2006).Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng. Int J Syst Evol Microbiol 56, 1777–1782.[CrossRef] [Google Scholar]
23. Xie, C. H. & Yokota, A.(2006). Reclassification of [Flavobacterium] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 1117–1121.[CrossRef] [Google Scholar]