1887

Abstract

A taxonomic study was carried out on strain YQH10, which was isolated from mangrove sediment collected from Zhangzhou, China during the screening of acetaldehyde-degrading bacteria. Cells of strain YQH10 were Gram-stain-negative rods and pale brown-pigmented. Growth was observed at salinities from 0 to 11 % and at temperatures from 4 to 42 °C. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain YQH10 is affiliated to the genus , showing the highest similarity with DW01 (95.7 %) and other species of the genus (91.4–95.6 %). The principal fatty acids were iso-C and Cω8. The major respiratory quinone was Q-8. The polar lipids comprised phosphatidylethanolamine and phosphatidylglycerol. The genomic DNA had a G+C content of 48.3 mol%. Strain YQH10 can completely degrade 0.02 % (w/v) acetaldehyde on 2216E at 28 °C within 48 h. Based on these phenotypic and genotypic data, strain YQH10 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is YQH10 ( = MCCC 1A00830 = JCM 30121).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.000313
2015-08-01
2021-10-25
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/65/8/2630.html?itemId=/content/journal/ijsem/10.1099/ijs.0.000313&mimeType=html&fmt=ahah

References

  1. Aguirre A.A., Balazs G.H., Zimmerman B., Spraker T.R. ( 1994;). Evaluation of Hawaiian green turtles (Chelonia mydas) for potential pathogens associated with fibropapillomas. J Wildl Dis 30 815 [View Article] [PubMed] .
    [Google Scholar]
  2. Brink A.J., van Straten A., van Rensburg A.J. ( 1995;). Shewanella (Pseudomonas) putrefaciens bacteremia. Clin Infect Dis 20 13271332 [View Article] [PubMed] .
    [Google Scholar]
  3. Felsenstein J. ( 1981;). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17 368376 [View Article] [PubMed] .
    [Google Scholar]
  4. Hirota K., Nodasaka Y., Orikasa Y., Okuyama H., Yumoto I. ( 2005;). Shewanella pneumatophori sp. nov., an eicosapentaenoic acid-producing marine bacterium isolated from the intestines of Pacific mackerel (Pneumatophorus japonicus). Int J Syst Evol Microbiol 55 23552359 [View Article] [PubMed] .
    [Google Scholar]
  5. Huang J., Sun B., Zhang X. ( 2010;). Shewanella xiamenensis sp. nov., isolated from coastal sea sediment. Int J Syst Evol Microbiol 60 15851589 [View Article] [PubMed] .
    [Google Scholar]
  6. Ivanova E.P., Kiprianova E.A., Mikhailov V.V., Levanova G.F., Garagulya A.D., Gorshkova N.M., Vysotskii M.V., Nicolau D.V., Yumoto N., other authors. ( 1998;). Phenotypic diversity of Pseudoalteromonas citrea from different marine habitats and emendation of the description. Int J Syst Bacteriol 48 247256 [View Article] [PubMed] .
    [Google Scholar]
  7. Jørgensen B.R., Huss H.H. ( 1989;). Growth and activity of Shewanella putrefaciens isolated from spoiling fish. Int J Food Microbiol 9 5162 [View Article] [PubMed] .
    [Google Scholar]
  8. Kates M. ( 1986). Techniques of Lipidology , 2nd edn. Amsterdam: Elsevier;.
    [Google Scholar]
  9. Kim D., Baik K.S., Kim M.S., Jung B.M., Shin T.S., Chung G.H., Rhee M.S., Seong C.N. ( 2007;). Shewanella haliotis sp. nov., isolated from the gut microflora of abalone, Haliotis discus hannai . Int J Syst Evol Microbiol 57 29262931 [View Article] [PubMed] .
    [Google Scholar]
  10. Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H., Park S.C., Jeon Y.S., Lee J.H., other authors. ( 2012;). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62 716721 [View Article] [PubMed] .
    [Google Scholar]
  11. Komagata K., Suzuki K. ( 1987;). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19 161207. [CrossRef]
    [Google Scholar]
  12. Lane D.J. ( 1991;). 16S/23S rRNA Sequencing. . In Nucleic Acid Techniques in Bacterial Systematics, pp. 115175. Edited by Stackebrandt E, Goodfellow M. Chichester: Wiley;.
    [Google Scholar]
  13. Liu Y., Shang X., Zeng R. ( 2015;). Permanent draft genome of acetaldehyde degradation bacterium, Shewanella sp. YQH10. Mar Genomics 19 911 [View Article] [PubMed] .
    [Google Scholar]
  14. MacDonell M.T., Colwell R.R. ( 1985;). Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella Shewanella . Syst Appl Microbiol 6 171182 [View Article].
    [Google Scholar]
  15. Myers C.R., Nealson K.H. ( 1988;). Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science 240 13191321 [View Article] [PubMed] .
    [Google Scholar]
  16. Park S.C., Baik K.S., Kim M.S., Kim D., Seong C.N. ( 2009;). Shewanella marina sp. nov., isolated from seawater. Int J Syst Evol Microbiol 59 18881894 [View Article] [PubMed] .
    [Google Scholar]
  17. Petrovskis E.A., Vogel T.M., Adriaens P. ( 1994;). Effects of electron acceptors and donors on transformation of tetrachloromethane by Shewanella putrefaciens MR-1. FEMS Microbiol Lett 121 357363 [View Article] [PubMed] .
    [Google Scholar]
  18. Russell N.J., Nichols D.S. ( 1999;). Polyunsaturated fatty acids in marine bacteria–a dogma rewritten. Microbiology 145 767779 [View Article] [PubMed] .
    [Google Scholar]
  19. Rzhetsky A., Nei M. ( 1992;). Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference. J Mol Evol 35 367375 [View Article] [PubMed] .
    [Google Scholar]
  20. Saitou N., Nei M. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 406425 [PubMed].
    [Google Scholar]
  21. Semple K.M., Westlake D.W.S. ( 1987;). Characterization of iron-reducing Alteromonas putrefaciens strains from oil field fluids. Can J Microbiol 33 366371 [View Article].
    [Google Scholar]
  22. Stackebrandt E., Goebel B.M. ( 1994;). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44 846849 [View Article].
    [Google Scholar]
  23. Tamaoka J., Komagata K. ( 1984;). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25 125128 [View Article].
    [Google Scholar]
  24. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. ( 2013;). mega6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30 27252729 [View Article] [PubMed] .
    [Google Scholar]
  25. Xu M., Guo J., Cen Y., Zhong X., Cao W., Sun G. ( 2005;). Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. Int J Syst Evol Microbiol 55 363368 [View Article] [PubMed] .
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.000313
Loading
/content/journal/ijsem/10.1099/ijs.0.000313
Loading

Data & Media loading...

Supplements

Supplementary Data

PDF

Most cited this month Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error