1887

Abstract

Three -like strains, NB53, NB446 and NB702, were isolated from traditional fermented food in Thailand. Comparative 16S rRNA gene sequence analysis indicated that these strains belong to the group. Phylogenetic analysis based on the , , and gene sequences indicated that these three strains were distantly related to known species present in the group. DNA–DNA hybridization with closely related strains demonstrated that these strains represented two novel species; the novel strains could be differentiated based on chemotaxonomic and phenotypic characteristics. Therefore, two novel species of the genus , sp. nov. (NB53) and sp. nov. (NB446 and NB702), are proposed with the type strains NB53 ( = NBRC 107333 = BCC 38054) and NB446 ( = NBRC 107235 = BCC 38191), respectively.

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2015-08-01
2020-01-18
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References

  1. Adimpong D.B., Nielsen D.S., Sørensen K.I., Vogensen F.K., Sawadogo-Lingani H., Derkx P.M.F., Jespersen L.. ( 2013;). Lactobacillus delbrueckii subsp. jakobsenii subsp. nov., isolated from dolo wort, an alcoholic fermented beverage in Burkina Faso. Int J Syst Evol Microbiol 63: 3720–3726 [CrossRef] [PubMed].
    [Google Scholar]
  2. Brosius J., Palmer M.L., Kennedy P.J., Noller H.F.. ( 1978;). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75: 4801–4805 [CrossRef] [PubMed].
    [Google Scholar]
  3. Dellaglio F., Felis G.E., Castioni A., Torriani S., Germond J.-E.. ( 2005;). Lactobacillus delbrueckii subsp. indicus subsp. nov., isolated from Indian dairy products. Int J Syst Evol Microbiol 55: 401–404 [CrossRef] [PubMed].
    [Google Scholar]
  4. Ezaki T., Hashimoto Y., Yabuuchi E.. ( 1989;). Fluorometric deoxyribonucleic acid- deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39: 224–229 [CrossRef].
    [Google Scholar]
  5. Felsenstein J.. ( 1981;). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368–376 [CrossRef] [PubMed].
    [Google Scholar]
  6. Felsenstein J.. ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791 [CrossRef].
    [Google Scholar]
  7. Fitch W.M.. ( 1971;). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20: 406–416 [CrossRef].
    [Google Scholar]
  8. Fitch W.M.. ( 1977;). On the problem of discovering the most parsimonious tree. Am Nat 111: 223–257 [CrossRef].
    [Google Scholar]
  9. Gross K.C., Houghton M.P., Senterfit L.B.. ( 1975;). Presumptive speciation of Streptococcus bovis and other group D streptococci from human sources by using arginine and pyruvate tests. J Clin Microbiol 1: 54–60 [PubMed].
    [Google Scholar]
  10. Gu C.T., Li C.Y., Yang L.J., Huo G.C.. ( 2013a;). Lactobacillus heilongjiangensis sp. nov. isolated from Chinese pickle. Int J Syst Evol Microbiol 63: 4094–4099 [CrossRef] [PubMed].
    [Google Scholar]
  11. Gu C.T., Li C.Y., Yang L.J., Huo G.C.. ( 2013b;). Lactobacillus mudanjiangensis sp. nov. Lactobacillus songhuajiangensis sp. nov. and Lactobacillus nenjiangensis sp. nov., isolated from Chinese traditional pickle and sourdough. Int J Syst Evol Microbiol 63: 4698–4706 [CrossRef] [PubMed].
    [Google Scholar]
  12. Hall T.A.. ( 1999;). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95–98.
    [Google Scholar]
  13. Hasegawa T., Takizawa M., Tanida S.. ( 1983;). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29: 319–322 [CrossRef].
    [Google Scholar]
  14. Huang C.-H., Lee F.-L., Liou J.-S.. ( 2010;). Rapid discrimination and classification of the Lactobacillus plantarum group based on a partial dnaK sequence and DNA fingerprinting techniques. Antonie van Leeuwenhoek 97: 289–296 [CrossRef] [PubMed].
    [Google Scholar]
  15. Kim J., Kim J.Y., Kim M.S., Roh S.W., Bae J.W.. ( 2013;). Lactobacillus kimchiensis sp. nov. isolated from a fermented food. Int J Syst Evol Microbiol 63: 1355–1359 [CrossRef] [PubMed].
    [Google Scholar]
  16. Kimura M.. ( 1980;). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111–120 [CrossRef] [PubMed].
    [Google Scholar]
  17. Kitahara M., Sakamoto M., Benno Y.. ( 2010;). Lactobacillus similis sp. nov. isolated from fermented cane molasses. Int J Syst Evol Microbiol 60: 187–190 [CrossRef] [PubMed].
    [Google Scholar]
  18. Mellmann A., Cloud J., Maier T., Keckevoet U., Ramminger I., Iwen P., Dunn J., Hall G., Wilson D., other authors. ( 2008;). Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria. J Clin Microbiol 46: 1946–1954 [CrossRef] [PubMed].
    [Google Scholar]
  19. Mesbah M., Premachandran U., Whitman W.B.. ( 1989;). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39: 159–167 [CrossRef].
    [Google Scholar]
  20. Miyashita M., Yukphan P., Chaipitakchonlatarn W., Malimas T., Sugimoto M., Yoshino M., Potacharoen W., Tanasupawat S., Nakagawa Y., other authors. ( 2012;). 16S rRNA gene sequence analysis of lactic acid bacteria isolated from fermented foods in Thailand. Microbiol Cult Collect 28: 1–9.
    [Google Scholar]
  21. Nakagawa Y., Sakane T., Suzuki M., Hatano K.. ( 2002;). Phylogenetic structure of the genera Flexibacter, Flexithrix, and Microscilla deduced from 16S rRNA sequence analysis. J Gen Appl Microbiol 48: 155–165 [CrossRef] [PubMed].
    [Google Scholar]
  22. Naser S.M., Thompson F.L., Hoste B., Gevers D., Dawyndt P., Vancanneyt M., Swings J.. ( 2005;). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA pheS genes. Microbiology 151: 2141–2150 [CrossRef] [PubMed].
    [Google Scholar]
  23. Nguyen D.T.L., Cnockaert M., Van Hoorde K., De Brandt E., Snauwaert I., Snauwaert C., De Vuyst L., Le B.T., Vandamme P.. ( 2013;). Lactobacillus porcinae sp. nov. isolated from traditional Vietnamese nem chua. Int J Syst Evol Microbiol 63: 1754–1759 [CrossRef] [PubMed].
    [Google Scholar]
  24. Saitou N., Nei M.. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406–425 [PubMed].
    [Google Scholar]
  25. Sukontasing S., Tanasupawat S., Moonmangmee S., Lee J.S., Suzuki K.. ( 2007;). Enterococcus camelliae sp. nov. isolated from fermented tea leaves in Thailand. Int J Syst Evol Microbiol 57: 2151–2154 [CrossRef] [PubMed].
    [Google Scholar]
  26. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S.. ( 2011;). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731–2739 [CrossRef] [PubMed].
    [Google Scholar]
  27. Tanasupawat S., Shida O., Okada S., Komagata K.. ( 2000;). Lactobacillus acidipiscis sp. nov. and Weissella thailandensis sp. nov. isolated from fermented fish in Thailand. Int J Syst Evol Microbiol 50: 1479–1485 [CrossRef] [PubMed].
    [Google Scholar]
  28. Tanasupawat S., Pakdeeto A., Thawai C., Yukphan P., Okada S.. ( 2007;). Identification of lactic acid bacteria from fermented tea leaves (miang) in Thailand and proposals of Lactobacillus thailandensis sp. nov. Lactobacillus camelliae sp. nov., and Pediococcus siamensis sp. nov. J Gen Appl Microbiol 53: 7–15 [CrossRef] [PubMed].
    [Google Scholar]
  29. Tanasupawat S., Sukontasing S., Lee J.S.. ( 2008;). Enterococcus thailandicus sp. nov. isolated from fermented sausage (‘mum’) in Thailand. Int J Syst Evol Microbiol 58: 1630–1634 [CrossRef] [PubMed].
    [Google Scholar]
  30. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G.. ( 1997;). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876–4882 [CrossRef] [PubMed].
    [Google Scholar]
  31. Yi E.-J., Yang J.-E., Lee J.M., Park Y., Park S.-Y., Shin H.-S., Kook M., Yi T.-H.. ( 2013;). Lactobacillus yonginensis sp. nov. a lactic acid bacterium with ginsenoside converting activity isolated from Kimchi. Int J Syst Evol Microbiol 63: 3274–3279 [CrossRef] [PubMed].
    [Google Scholar]
  32. Zou Y., Liu F., Fang C., Wan D., Yang R., Su Q., Yang R., Zhao J.. ( 2013;). Lactobacillus shenzhenensis sp. nov. isolated from a fermented dairy beverage. Int J Syst Evol Microbiol 63: 1817–1823 [CrossRef] [PubMed].
    [Google Scholar]
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