1887

Abstract

The species was described in 1963 and the name validly published in 1980. Its type strain, INMI N-9, was deposited in the VKM collection by one of the authors reporting its 5S rRNA gene sequence. Based on the analysis of this sequence, the currently distributed strains VKM B-1340 and CECT 7960 are not the original type strain of . A 16S rRNA gene sequence analysis of strain CECT 7960 had previously shown that this strain belongs to the species , and this result was confirmed in the present paper by matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF) MS analysis for both CECT 7960 and VKM B-1340. Therefore, we propose that the Judicial Commission consider the following. (1) That the organism currently deposited as VKM B-1340 and CECT 7960 be recognized as a member of the species . (2) That the organism deposited as VKM B-1340 and CECT 7960 does not represent the type strain of the species . (3) To place the species name Aristovskaya and Parinkina 1963 (Approved Lists 1980) on the list of rejected names if a suitable replacement strain, or a neotype, cannot be found within two years of publication of this Request (Rule 18c). (4) To place the genus name Aristovskaya and Parinkina 1963 (Approved Lists 1980) on the list of rejected names (Recommendation 20d) if a suitable replacement type strain or a neotype for the type species of the genus Aristovskaya and Parinkina 1963 (Approved Lists 1980) is not identified as indicated in point (3).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.000262
2015-07-01
2020-01-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/65/7/2337.html?itemId=/content/journal/ijsem/10.1099/ijs.0.000262&mimeType=html&fmt=ahah

References

  1. Aristovskaya T.V. . ( 1974;). Genus Seliberia Aristovskaya and Parinkina 1963, 56. . In Bergey's Manual of Determinative Bacteriology, p. 160. Edited by Buchanan R. E. , Gibbons N. E. . , 8th edn. Baltimore, MD: Williams & Wilkins;.
    [Google Scholar]
  2. Aristovskaya T.V. , Parinkina O.M. . ( 1963;). A new soil microorganism Seliberia stellata n. gen. n. sp. Bull. Acad. Sci. USSR (Series Biology) 218: 49–56.
    [Google Scholar]
  3. Bulygina E.S. , Galchenko V.F. , Govorukhina N.I. , Netrusov A.I. , Nikitin D.I. , Trotsenko Y.A. , Chumakov K.M. . ( 1990;). Taxonomic studies on methylotrophic bacteria by 5S ribosomal RNA sequencing. J Gen Microbiol 136: 441–446 [CrossRef] [PubMed].
    [Google Scholar]
  4. Chumakov K.M. . ( 1987;). Evolution of nucleotide sequences. . In Physiocochemical Biology Reviews (Soviet Scientific Reviews, Section D) pp. 51–94. Edited by Skulachev V. P. . 7 Newark, NJ: Harwood Academic;.
    [Google Scholar]
  5. Kim O.S. , Cho Y.J. , Lee K. , Yoon S.H. , Kim M. , Na H. , Park S.C. , Jeon Y.S. , Lee J.H. , other authors . ( 2012;). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62: 716–721 [CrossRef] [PubMed].
    [Google Scholar]
  6. Kimura M. . ( 1980;). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111–120 [CrossRef] [PubMed].
    [Google Scholar]
  7. Rivas R. , Willems A. , Palomo J.L. , García-Benavides P. , Mateos P.F. , Martínez-Molina E. , Gillis M. , Velázquez E. . ( 2004;). Bradyrhizobium betae sp. Nov. isolated from roots of Beta vulgaris affected by tumour-like deformations. Int J Syst Evol Microbiol 54: 1271–1275 [CrossRef] [PubMed].
    [Google Scholar]
  8. Rivas R. , García-Fraile P. , Mateos P.F. , Martínez-Molina E. , Velázquez E. . ( 2007;). Characterization of xylanolytic bacteria present in the bract phyllosphere of the date palm Phoenix dactylifera. Lett Appl Microbiol 44: 181–187 [PubMed].[CrossRef]
    [Google Scholar]
  9. Robledo M. , Velázquez E. , Ramírez-Bahena M.H. , García-Fraile P. , Pérez-Alonso A. , Rivas R. , Martínez-Molina E. , Mateos P.F. . ( 2011;). The celC gene, a new phylogenetic marker useful for taxonomic studies in Rhizobium . Syst Appl Microbiol 34: 393–399 [CrossRef] [PubMed].
    [Google Scholar]
  10. Saitou N. , Nei M. . ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406–425 [PubMed].
    [Google Scholar]
  11. Sánchez-Juanes F. , Ferreira L. , Alonso de la Vega P. , Valverde A. , Barrios M.L. , Rivas R. , Mateos P.F. , Martínez-Molina E. , González-Buitrago J.M. , other authors . ( 2013;). MALDI-TOF mass spectrometry as a tool for differentiation of Bradyrhizobium species: application to the identification of Lupinus nodulating strains. Syst Appl Microbiol 36: 565–571 [CrossRef] [PubMed].
    [Google Scholar]
  12. Schmidt J.M. , Kelly D.P. . ( 1984;). Genus XVIII. Seliberia Aristovskaya and Parinkina 1963, 56AL. . In Bergey's Manual of Systematic Bacteriology, pp. 549–554. Edited by Brenner D. J. , Krieg N. R. , Staley J. T. . vol. 2 , 2nd edn. Berlin: Springer;.
    [Google Scholar]
  13. Stackebrandt E. . ( 1992;). Unifying phylogeny and phenotypic diversity. In The Prokaryotes: A Handbook of Bacteria: Ecophysiology, Isolation, Identification, Applications, pp. 19–47. Edited by Ballows A. , Trüper H. G. , Dworkin M. , Harder W. , Schleifer K. . , 2nd edition. New York: Springer-Verlag;.
    [Google Scholar]
  14. Skerman V.B.D. , McGowan V. , Sneath P.H.A. . ( 1980;). Approved lists of bacterial names. Int J Syst Bacteriol 30: 225–420 [CrossRef].
    [Google Scholar]
  15. Tamura K. , Peterson D. , Peterson N. , Stecher G. , Nei M. , Kumar S. . ( 2011;). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731–2739 [CrossRef] [PubMed].
    [Google Scholar]
  16. Thompson J.D. , Gibson T.J. , Plewniak F. , Jeanmougin F. , Higgins D.G. . ( 1997;). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876–4882 [CrossRef] [PubMed].
    [Google Scholar]
  17. Yarza P. , Spröer C. , Swiderski J. , Mrotzek N. , Spring S. , Tindall B.J. , Gronow S. , Pukall R. , Klenk H.P. , other authors . ( 2013;). Sequencing orphan species initiative (SOS): filling the gaps in the 16S rRNA gene sequence database for all species with validly published names. Syst Appl Microbio 36: 69–73 [CrossRef] [PubMed].
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.000262
Loading
/content/journal/ijsem/10.1099/ijs.0.000262
Loading

Data & Media loading...

Supplements

Supplementary Data



PDF

Most cited articles

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error