1887

Abstract

Almost complete 16S rDNA sequences from the type strains of seven species of the genus and of have been determined. The species form two phylogenetic clusters that are only moderately related to each other. While cluster I contains the type species and , cluster II comprises and Within the two species clusters, the species are highly related. Phylogenetically, clusters moderately with species. The lack of distinguishing phenotypical properties presently excludes the possibility of describing cluster II as a new genus.

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1998-07-01
2024-12-14
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References

  1. Boulygina E. S., Chumakov K. M., Netrusov A. I. 1993; Systematics of Gram-negative methylotrophic bacteria based on 5S rRNA sequences. In Microbial Growth on C1 Compounds pp 275–284 Edited by Murrel J. C., Kelly D. P. Andover:Intercept.
    [Google Scholar]
  2. Brosius J., Palmer M. L., Kennedy P. J., Noller H. F. 1978; Complete nucleotide sequence of the 16S ribosomal RNA gene from Escherichia coli . Proc Natl Acad Sci USA 75:4801–4805
    [Google Scholar]
  3. De Soete G. 1983; A least squares algorithm for fitting additive trees to proximity data. Psychometrika 48:621–626
    [Google Scholar]
  4. Felsenstein J. 1993; phylip (phylogenetic inference package) version 3.5.1. Department of Genetics, University of Washington, Seattle.
    [Google Scholar]
  5. Gebers R. 1989; Genus Pedomicrobium Aristovskaya 1961, 957AL emend. Gebers 1981, 313, In Bergey's Manual of Systematic Bacteriology,. vol 3, 9th edn. pp 1910–1914 Edited by Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  6. Gebers R., Martens B., Wehmeyer U., Hirsch P. 1986; Deoxyribonucleic acid homologies of Hyphomicrobium spp., Hyphomonas spp., and other hyphal, budding bacteria. Int J Syst Bacteriol 36:241–245
    [Google Scholar]
  7. Gliesche C. G., Holm N. C., Beese M., Neumann N., Völker H., Gebers R., Hirsch P. 1988; New bacteriophages active on strains of Hyphomicrobium. J Gen Microbiol 134:1339–1353
    [Google Scholar]
  8. Guckert J. B., Ringelberg D. B., White D., Hanson D. S., Bratina B. J. 1991; Membrane fatty acids as phenotypic markers in the polyphasic taxonomy of methylotrophs within the Proteobacteria . J Gen Microbiol 137:2631–2641
    [Google Scholar]
  9. Hanson R. S. 1992; Introduction. In Methane and Methanol Utilizers pp 1–21 Edited by Murrell J. C., Dalton H. New York: Plenum Press;
    [Google Scholar]
  10. Harder W., Attwood M. M. 1978; Biology, physiology and biochemistry of hyphomicrobia. Adv Microb Physiol 17:303–359
    [Google Scholar]
  11. Hirsch P. 1989; Genus Hyphomicrobium Stutzer and Hartleb 1898, 76AL. In Bergey’s Manual of Systematic Bacteriology, 9th edn. vol 3 pp 1897–1904 Edited by Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  12. Hirsch P., Hoffmann B. 1989; Dichotomicrobium thermo- halophilum, gen. nov., spec, nov., budding prosthecate bacteria from the Solar Lake (Sinai) and some related strains. Syst Appl Microbiol 11:291–301
    [Google Scholar]
  13. Httfle M. G. 1990; Transfer RNAs as genotypic fingerprints of eubacteria. Arch Microbiol 153:299–304
    [Google Scholar]
  14. Holm N. C., Gliesche C. G., Hirsch P. 1996; Diversity and structure of Hyphomicrobium populations in a sewage treatment plant and its adjacent receiving lake. Appl Environ Microbiol 62:522–528
    [Google Scholar]
  15. Imhoff J. F., TrUper H. G. 1989; Genus Rhodomicrobium Duchow and Douglas 1949, 415AL. In Bergefs Manual of Systematic Bacteriology vol 3:, 9th edn. pp 1677–1678 Edited by Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  16. Moore R. L. 1977; Ribosomal ribonucleic acid cistron homologies among Hyphomicrobium and various other bacteria. Can J Microbiol 23:478–481
    [Google Scholar]
  17. Moore R. L., Hirsch P. 1972; Deoxyribonucleic acid base sequence homologies of some budding and prosthecate bacteria. J Bacteriol 110:256–261
    [Google Scholar]
  18. Moore R. L., Weiner R. M. 1989; Genus Hyphomonas (ex Pongratz 1957) Moore, Weiner and Gebers 1984, 71vp. In Bergey's Manual of Systematic Bacteriology vol 3:, 9 th edn. pp 1904–1910 Edited by Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  19. Nikitin D. I., Yu O., Vishnewetskaya K., Chumakov M., Zlatkin I. V. 1990; Evolutionary relationship of some stalked and budding bacteria (genera Caulobacter, Hyphobacter, Hyphomonas, and Hyphomicrobium) as studied by the new integral taxonomical method. Arch Microbiol 153:123–128
    [Google Scholar]
  20. Nyberg U., Aspegren H., Andersson B., Jansen J. laC., Villadsen I. S. 1992; Full-scale application of nitrogen removal with methanol as carbon source. Water Sci Technol 26:1077–1086
    [Google Scholar]
  21. Rainey F. A., Ward-Rainey N., Kroppenstedt R. M., Stackebrandt E. 1996; The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46:1088–1092
    [Google Scholar]
  22. Roggentin T., Hirsch P. 1989; Ribosomal RNA cistron similarities among Hyphomicrobium species and several other hyphal, budding bacteria. Syst Appl Microbiol 11:140–147
    [Google Scholar]
  23. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
  24. Schlesner H. 1987; Filomicrobium fusiforme gen. nov., sp. nov., a slender budding, hyphal bacterium from brackish water. Syst Appl Microbiol 10:63–67
    [Google Scholar]
  25. Sittig M., Hirsch P. 1992; Chemotaxonomic investigation of budding and/or hyphal bacteria. Syst Appl Microbiol 15:209–222
    [Google Scholar]
  26. Stackebrandt E. R. G., Fischer A., Roggentin T., Wehmeyer U., Smida J. 1988; A phylogenetic survey of budding, and/or prosthecate, non-phototrophic eubacteria: membership of Hyphomicrobium, Hyphomonas, Pedomicrobium, Filo-microbium, Caulobacter and ‘ Dichotomicrobium ’ to the alpha- subdivision of purple non-sulfur bacteria. Arch Microbiol 149:547–556
    [Google Scholar]
  27. Strunk O., Ludwig W. 1995 ARB- a Software Environment for Sequence Data Munich Department of Microbiology, Technical University of Munich.
    [Google Scholar]
  28. Takada N. 1975; A new species of Hyphomicrobium.. In Proceedings of the International Symposium on Microbial Growth on C1 Compounds pp 29–33 Edited by Terui G. Tokyo: Society for Fermentation Technology;
    [Google Scholar]
  29. Tsuji K., Tsien H. C., Hanson R. S., De Palma S. R., Scholtz R., Laroche S. 1990; 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs. J Gen Microbiol 136:1–10
    [Google Scholar]
  30. Urakami T., Sasaki J., Suzuki K.-l., Komagata K. 1995; Characterization and description of Hyphomicrobium denitrificans sp. nov. Int J Syst Bacteriol 45:528–532
    [Google Scholar]
  31. Vedenina J., Ya. N., Chernykh A., Lebedinskii A. V., Andreev L. V. 1990; Correlations of characteristics in subgroups of the genus. Hyphomicrobium. Mikrobiologiya 59:895–902 English translation 617–622
    [Google Scholar]
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