1887

Abstract

The taxonomic position of a misclassified strain, IAM 12670 (= ATCC 25925 = P. R. Dugan 115), was reevaluated. A phylogenetic analysis based on 16S ribosomal rDNA sequences revealed that this organism was located in the beta subclass of the class with members of the genus as its closest relatives. On the basis of phenotypic and phylogenetic information, we propose that this organism should be reclassified in a new taxon with the name gen. nov., sp. nov.

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1997-10-01
2024-10-11
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References

  1. Bowman J. P., Sly L. I., Hayward A. C., Spiegel Y., Stackebrandt E. 1993; Telluria mixta (Pseudomonas mixta Bowman, Sly, and Hayward 1988) gen. nov., comb, nov., and Telluria chitinolytica sp. nov., soil-dwelling organisms which actively degrade polysaccharides. Int. J. Syst. Bacteriol. 43:120–124
    [Google Scholar]
  2. Crabtree K., MaCoy E. 1967; Zoogloea ramigera Itzigsohn, identification and description. Request for an Opinion as to the status of the generic name Zoogloea. Int. J. Syst. Bacteriol. 17:1–10
    [Google Scholar]
  3. Doudroff M., Palleroni N. J. 1974 Genus Pseudomonas. 217–243 Buchanan R. E., Gibbons N. E.ed Bergey’s manual of determinative bacteriology, 8th. The Williams & Wilkins Co.; Baltimore, Md.:
    [Google Scholar]
  4. Dugan P. R., Stoner D. L., Pickrum H. M. 1992 The genus Zoogloea. 3952–3964 Balows A., Triiper H. G., Dworkin M., Harder W., Schleifer K.-H.ed The prokaryotes, 2nd. Springer-Verlag; New York, N.Y.:
    [Google Scholar]
  5. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
    [Google Scholar]
  6. Friedman B. A., Dugan P. R. 1968; Identification of Zoogloea species and the relationship to zoogloeal matrix and floc formation. J. Bacteriol. 95:1903–1909
    [Google Scholar]
  7. Gillis M., Tran Van V., Bardin R., Goor M., Hebbar P., Willems A., Segers P., Kersters K., Heulin T., Fernandez M. P. 1995; Polyphasic taxonomy in the genus Burkholderia leading to an emended description of the genus and proposition of Burkholderia vietnamiensis sp. nov. for N2-fixing isolates from rice in Vietnam. Int. J. Syst. Bacteriol. 45:274–289
    [Google Scholar]
  8. Hamana K., Matsuzaki S. 1993; Polyamine distribution patterns serve as a phenotypic marker in the chemotaxonomy of the Proteobacteria. Can. J. Microbiol. 39:304–310
    [Google Scholar]
  9. Hiraishi A., Shin Y. K., Sugiyama J. 1992; Isoprenoid quinones and fatty acids of Zoogloea. Antonie van Leeuwenhoek 61:231–236
    [Google Scholar]
  10. Hiraishi A., Shin Y. K., Sugiyama J. 1995; Brachymonas denitrificans gen. nov., sp. nov., a rhodoquinone-containing chemoorganotrophic bacterium, and evolutionary relationships of rhodoquinone producers to bacterial members with various quinone classes. J. Gen. Appl. Microbiol. 41:99–117
    [Google Scholar]
  11. Hiraishi A., Shin Y. K., Ueda Y., Sugiyama J. 1994; Automated sequencing of PCR-amplified 16S rDNA on “Hydrolink” gels. J. Microbiol. Methods 19:145–154
    [Google Scholar]
  12. Joyce G. H., Dugan P. R. 1970; The role of floc-forming bacteria in BOD removal from wastewater. Dev. Ind. Microbiol. 11:377–386
    [Google Scholar]
  13. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111–120
    [Google Scholar]
  14. Maidak B. L., Olsen G. J., Larsen N., Overbeek R., McCaughey M. J., Woese C. R. 1997; The RDP (Ribosomal Database Project). Nucleic Acids Res. 25:109–110
    [Google Scholar]
  15. Mergaert J., Schirmer A., Hauben L., Mau M., Hoste B., Kersters K., Jendrossek D., Swings J. 1996; Isolation and identification of polyPhydroxyvalerateEdegrading strains of Pseudomonas lemoignei. Int. J. Syst. Bacteriol. 46:769–773
    [Google Scholar]
  16. Mitsui H. Personal communication
  17. Rossello-Mora R. A., Ludwig W., Schleifer K. H. 1993; Zoogloea ramigera: a phylogenetically diverse species. FEMS Microbiol. Lett. 104:129–134
    [Google Scholar]
  18. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406–425
    [Google Scholar]
  19. Shin Y. K., Hiraishi A., Sugiyama J. 1993; Molecular systematics of the genus Zoogloea and emendation of the genus. Int. J. Syst. Bacteriol. 43:826–831
    [Google Scholar]
  20. Strand S. E., McDonnell A. J., Unz R. F. 1988; Oxygen and nitrate reduction kinetics of a nonflocculating strain of Zoogloea ramigera. Antonie van Leeuwenhoek 54:245–255
    [Google Scholar]
  21. Thompson J. D., Higgins D. G., Gibson T. J. 1991; CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673–4680
    [Google Scholar]
  22. Unz R. F. 1971; Neotype strain of Zoogloea ramigera Itzigsohn. Int. J. Syst. Bacteriol. 21:91–99
    [Google Scholar]
  23. Unz R. F. 1984 Genus IV. Zoogloea Itzigsohn 1868, 30AL. 214–219 Krieg N. R., Holt J. G.ed Bergey’s manual of systematic bacteriology 1 The Williams & Wilkins Co.; Baltimore, Md.:
    [Google Scholar]
  24. Welsh J., McClelland M. 1990; Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:7213–7218
    [Google Scholar]
  25. Willems A., Falsen E., Pot B., Jantzen E., Hoste B., Vandamme P., Gillis M., Kersters K., De Ley J. 1990; Acidovarax, a new genus for Pseudomonas facillis, Pseudomonas delafieldii, E. Falsen (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb, nov., Acidovorax delafieldii comb, nov., and Acidovorax temperans sp. nov. Int. J. Syst. Bacteriol. 40:384–398
    [Google Scholar]
  26. Willems A., Gillis M., Kersters K., Van den Broecke L., De Ley J. 1991; Polyphasic taxonomic study of the emended genus Comamonas: relationship to Aquaspirillum aquaticum, E. Falsen group 10, and other clinical isolates. Int. J. Syst. Bacteriol. 41:427–444
    [Google Scholar]
  27. Williams J. G. K., Kubelik A. R., Livak K. J., Rafalski J. A., Tingey S. C. 1990; DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:6531–6535
    [Google Scholar]
  28. Yabuuchi E., Kosako Y., Yano I., Hotta H., Nishibuchi Y. 1995; Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb, nov., Ralstonia solanacearum (Smith 1896) comb. nov. and Ralstonia eutropha (Davis 1969) comb. nov. Microbiol. Immunol. 39:897–904
    [Google Scholar]
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