Comparative Sequence Analyses of the Genes Coding for 16S rRNA of Lactobacillus casei-Related Taxa

References

1. Bentley R. W., Leigh J. A., Collins M. D. 1991; Intragenetic structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences. Int. J. Syst. Bacteriol. 41:487–494
   [Google Scholar]
2. Bio-Rad Laboratories. 1992 InstaGene purification matrix manual Bio-Rad Laboratories; Richmond, Calif.:
   [Google Scholar]
3. Collins M. D., Phillips B. A., Zanoni P. 1989; Deoxyribonucleic acid homology studies of Lactobacillus casei, Lactobacillus paracasei sp. nov., subsp. paracasei and subsp. tolerans, and Lactobacillus rhamnosus sp. nov., comb. nov. Int. J. Syst. Bacteriol. 39:105–108
   [Google Scholar]
4. Collins M. D., Ash C., Farrow J. A. E., Wallbanks S., Williams A. M. 1989; 16S ribosomal ribonucleic acid sequence analyses of lactococci and related taxa, description of Vagococcus fluvialis gen. nov., sp. nov. J. Appl. Bacteriol. 67:453–460
   [Google Scholar]
5. Collins M. D., Williams A. M., Wallbanks S. 1990; The phytogeny of Aerococcus and Pediococcus as determined by 16S rRNA sequence analysis: description of Tetragenococcus gen. nov. FEMS Microbiol. Lett. 70:255–262
   [Google Scholar]
6. Collins M. D., Rodrigues U., Ash C., Aguirre M., Farrow J. A. E., Martinez-Murcia A., Philips B. A., Williams A. M., Wallbanks S. 1991; Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol. Lett. 77:5–12
   [Google Scholar]
7. Dellaglio F., Bottazzi V., Vescovo M. 1975; Deoxyribonucleic acid homology among Lactobacillus species of the subgenus Streptobacterium Orla-Jensen. Int. J. Syst. Bacteriol. 25:160–172
   [Google Scholar]
8. Dellaglio F., Dicks L. M. T., Toit M. Du, Torriani S. 1991; Designation of ATCC 334 in place of ATCC 393 (NCDO 161) as the neotype strain of Lactobacillus casei subsp. casei and rejection of the name Lactobacillus paracasei (Collins et al., 1989). Request for an opinion. Int. J. Syst. Bacteriol. 41:340–342
   [Google Scholar]
9. Dicks L. M. T., Du Plessis E. M., Dellaglio F., Lauer E. 1996; Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei. Int. J. Syst. Bacteriol. 46:337–340
   [Google Scholar]
10. Hammes W. P., Weiss N., Holzapfel W. 1992; The genera Lactobacillus and Carnobacterium. 1535–1594 Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K.-H. The prokaryotes, 2nd ed.. 2 Springer-Verlag; New York, N.Y.:
    [Google Scholar]
11. Kandier O., Weiss N. 1986; Genus Lactobacillus Beijerinck 1901. 1209–1234 Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G. Bergey’s manual of systematic bacteriology 2 The Williams & Wilkins Co.; Baltimore, Md.:
    [Google Scholar]
12. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111–120
    [Google Scholar]
13. Martinez-Murcia A. J., Collins M. D. 1990; A phylogenetic analysis of the genus Leuconostoc based on reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol. Lett. 70:73–84
    [Google Scholar]
14. Perkin-Elmer Co. 1993 373 DNA sequencing system user’s manual Perkin-Elmer Co.; Norwalk, Conn.:
    [Google Scholar]
15. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406–425
    [Google Scholar]
16. Skerman V. B. D., McGowan V., Sneath P. H. A. 1980; Approved lists of bacterial names. Int. J. Syst. Bacteriol. 30:225–420
    [Google Scholar]
17. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846–849
    [Google Scholar]
18. Tamura K., Nei M. 1993; Estimation of the numbers of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512–526
    [Google Scholar]
19. Walbank S., Martinez-Murcia A. T., Fryer J. L., Phillips B. A., Collins M. D. 1990; 16S rRNA determination for members of genus Carnobacterium and related lactic acid bacteria and description of Vagococcus salmoninarum sp. nov. Int. J. Syst. Bacteriol. 40:224–230
    [Google Scholar]
20. Wayne L. G. 1994; Action of the Judicial Commission of the International Committee on Systematic Bacteriology on requests for opinion published between January 1985 and July 1993. Int. J. Syst. Bacteriol. 44:177–178
    [Google Scholar]
21. Wittwer C. T., Garling D. J. 1991; Rapid cycle DNA amplification: time and temperature optimization. BioTechniques 10:76–83
    [Google Scholar]
22. Woese C. R. 1987; Bacterial evolution. Microbiol. Rev. 51:221–271
    [Google Scholar]
23. Yang D., Woese C. R. 1989; Phylogenetic structure of the “Leuconostoc”: an interesting case of a rapidly evolving organism. Syst. Appl. Microbiol. 12:154–149
    [Google Scholar]