A Phylogenetic Analysis of the Genus Saccharomonospora Conducted with 16S rRNA Gene Sequences

References

1. Amner W., Edwards C., McCarthy A. J. 1989; Improved medium for recovery and enumeration of the farmer’s lung organism, Saccharomono-spora viridis. Appl. Environ. Microbiol. 55:2669–2674
   [Google Scholar]
2. Andersen A. A. 1958; New sampler for the collection, sizing, and enumeration of viable airborne particles. J. Bacteriol 76:471–484
   [Google Scholar]
3. Barrowcliff D. E., Arblaster P. G. 1968; Farmer’s lung: a study of an early acute fatal case. Thorax 23:490–500
   [Google Scholar]
4. Boddinghaus B., Rogall T., Flohr T., Blocker H., Bottger E. C. 1990; Detection and identification of mycobacteria by amplication of rRNA.. J. Clin. Microbiol 28:1751–1759
   [Google Scholar]
5. Bowen T., Stackebrandt E., Dorsch M., Embley T. M. 1989; The phylogeny of Amycolata autotrophica, Kibdelosporangium aridum and Sac-charothrix australiensis . J. Gen. Microbiol 135:2529–2536
   [Google Scholar]
6. Brosius J., Palmer M. L., Kennedy J. P., Noller H. F. 1978; Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli . Proc. Natl. Acad. Sci.USA 75:4801–808
   [Google Scholar]
7. Chun J. Unpublished data
8. DeLong E. F., Wickham G. S., Pace W. R. 1989; Phylogenetic strains: ribosomal RNA-based probes for the identification of single microbial cells. Science 243:1360–1363
   [Google Scholar]
9. Embley T. M., Smida J., Stackebrandt E. 1988; Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopotyspora hirsuta, three wall IV actinomycetes which lack mycolic acids. J. Gen. Microbiol 134:961–966
   [Google Scholar]
10. Embley T. M., Smida J., Stackebrandt E. 1988; The phylogeny of mycolateless wall chemotype IV actinomycetes and description of Pseudo-nocardiaceae fam. nov. Syst. Appl. Microbiol 11:44–52
    [Google Scholar]
11. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
    [Google Scholar]
12. Felsenstein J. 1993; PHYLIP (phylogenetic inference package) version 3.5c. Department of Genetics, University of Washington; Seattle:
    [Google Scholar]
13. Fox G. E., Wisotzkey J. D., Jurkshuk P. Jr 1992; How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol 42:166–170
    [Google Scholar]
14. Fry N. K., Warwick S., Saunders N. A., Embley T. M. 1991; The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae . J. Gen. Microbiol 137:1215–1222
    [Google Scholar]
15. Goodfellow M., Pirouz T. 1982; Numerical classification of sporoacti-nomycetes containing meso-diaminopimelic acid in the cell wall. J. Gen. Microbiol 128:503–527
    [Google Scholar]
16. Greene J. G., Treuhaft M. W., Arnsell R. M. 1981; Hypersensitivity pneumonitis due to Saccharomonospora viridis diagnosed by inhalation challenge. Ann. Allergy 47:449–452
    [Google Scholar]
17. Gretner-Mai E., Korn-Wendisch F., Kutzner H. J. 1988; Taxonomic revision of the genus Saccharomonospora and description of Saccharomonospora glauca sp. nov. Int. J. Syst. Bacteriol 38:398–405
    [Google Scholar]
18. Greiner-Mai E., Kroppenstedt R. M., Korn-Wendisch F., Kutzner H. J. 1987; Morphological and biochemical characterization and emended descriptions of thermophilic actinomycetes species. Syst. Appl. Microbiol 9:97–109
    [Google Scholar]
19. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules,. 21–132 Munro H. N. Mammalian protein metabolism Academic Press, Inc.; New York:
    [Google Scholar]
20. Kalakoutskii L. V. 1964; A new species of the genus Micropofyspora— Micropolyspora caesia n. sp.. Microbiology 33:765–768
    [Google Scholar]
21. Kroppenstedt R. M. 1985; Fatty acid and menaquinone analysis of actinomycetes and related organisms,. 173–189 Goodfellow M., Minnikin D. E. Chemical methods in bacterial systematics Academic Press Ltd; London:
    [Google Scholar]
22. Kurup V. P. 1981; Taxonomic study of some members of Micropolyspora and Saccharomonospora . Microbiologica 4:249–259
    [Google Scholar]
23. Lane D. J., Pace B., Olsen G. J., Stahl D. A., Sogin M. L., Pace N. R. 1985; Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.. Proc. Natl. Acad. SciUSA 82:6955–6959
    [Google Scholar]
24. Larsen N., Olsen G. J., Maidak B. L., McCaughey M. J., Overbeek R., Macke T. J., Marsh T. L., Woese C. R. 1993; The ribosomal database project. Nucleic Acids Res 21:3021–3023
    [Google Scholar]
25. Lechevalier M. P., Lechevalier H. A. 1970; A critical evaluation of the genera of aerobic actinomycetes,. 393–405 Prauser H. The Acti-nomycetales Gustav Fisher Verlag; Jena, Germany:
    [Google Scholar]
26. Marmur J. 1961; A procedure for the isolation of DNA from microorganisms. J. Mol. Biol 3:208–218
    [Google Scholar]
27. McCarthy A. J., Cross T. 1984; A taxonomic study of Thermomono-spora and other monosporic actinomycetes. J. Gen. Microbiol 130:5–25
    [Google Scholar]
28. McVeigh H. P., Munro J., Embley T. M. 1994; The phylogenetic position of Pseudoamycolata halophobica (Akimov et al. 1989) and a proposal to reclassify it as Pseudonocardia halophobica . Int. J. Syst. Bacteriol 44:300–302
    [Google Scholar]
29. Murray R. G. E., Brenner D. J., Colwell R. R., De Vos P., Goodfellow M., Grimont P. A. D., Pfennig N., Stackebrandt E., Zavarzin G. A. 1990; Report of the Ad Hoc Committee on Approaches to Taxonomy within the Proteobacteria. Int. J. Syst. Bacteriol 40:213–215
    [Google Scholar]
30. Nonomura H., Ohara Y. 1971; Distribution of actinomycetes in soil. X. New genus and species of monosporic actinomycetes. J. Ferment. Technol 49:895–903
    [Google Scholar]
31. Ochi K., Yoshida M. 1991; Polyacrylamide gel electrophoresis analysis of mycolateless wall chemotype IV actinomycetes. Int. J. Syst. Bacteriol 41:402–405
    [Google Scholar]
32. Runmao H. 1987; Saccharomonospora azurea sp. nov., a new species from soil. Int. J. Syst. Bacteriol 37:60–61
    [Google Scholar]
33. Runmao H., Lin C., Guizhen W. 1988; Saccharomonospora cyanea sp. nov. Int. J. Syst. Bacteriol 38:444–446
    [Google Scholar]
34. Saitou N., Nei M. 1987; The neighbor joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol 4:406–425
    [Google Scholar]
35. Skerman V. B. D., McGowan V., Sneath P. H. A. 1980; Approved lists of bacterial names. Int. J. Syst. Bacteriol 30:225–420
    [Google Scholar]
36. Warwick S., Bowen T., McVeigh H., Embley T. M. 1994; A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia. Int. J. Syst. Bacteriol 44:293–299
    [Google Scholar]
37. Wellington E. M. H., Williams S. T. 1978; Preservation of actinomycete inoculum in frozen glycerol. Microbios Lett 6:151–159
    [Google Scholar]