1887

Abstract

Abstract

To clarify the taxonomic relationships of the genera and the 16S rRNA sequence of IFO 15211 (T = type strain) was determined. A phylogenetic analysis of aligned 16S rRNA gene sequences revealed that eight species of the genus and are closely related to and and, therefore, belong in the alpha-4 subclass of the Within this subclass, species and are phylogenetically interrelated and comprise several subgroups. Our findings show that the genus and species definitions of these organisms are in need of revision.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/00207713-44-2-308
1994-04-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/44/2/ijs-44-2-308.html?itemId=/content/journal/ijsem/10.1099/00207713-44-2-308&mimeType=html&fmt=ahah

References

  1. Brosius J., Palmer J. L., Kennedy J. P., Noller H. F. 1978; Complete nucleotide sequence of a 16S ribosomal RNAgene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75 4801 4805
    [Google Scholar]
  2. Burgess J. G., Kawaguchi R., Sakaguchi T., Thornhill R. H., Stackebrandt E. 1993; Evolutionary relationships among Magnetospirillum strains inferred from phylogenetic analysis of 16S rDNA sequences. J. Bacteriol. 175 6689 6694
    [Google Scholar]
  3. Dame J. B., Mahan S. M., Yowell C. A. 1992; Phylogenetic relationship of Cowdria reminantium, agent of heartwater, to Anaplasma marginale and other members of the oråer Rickettsiales determined on the basis of 16S rRNA sequence. Int. J. Syst. Bacteriol. 42 270 274
    [Google Scholar]
  4. Fuerst J. A., Hawkins J. A., Holmes A., Sly L. I., Moore C. J., Stackebrandt E. 1993; Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium from freshwater. Int. J. Syst. Bacteriol. 43 125 134
    [Google Scholar]
  5. Higgins D. G., Bleasby A. J., Fuchs R. 1992; Clustal V: improved software for multiple sequence alignment. CABIOS 8 189 190
    [Google Scholar]
  6. Holmes B., Owen R. J., Evans A., Malnick H., Willcox W. R. 1977; Pseudomonas paucimobilis, a new species isolated from human clinical specimens, the hospital environment, and other sources. Int. J. Syst. Bacteriol. 27 133 146
    [Google Scholar]
  7. Ina Y. 1991 Molecular evolutionary analysis system for DNA and amino acid sequences (ODEN), version 1.1 DNA Data Bank of Japan, DNA Research Center, National Institute of Genetics; Mishima, Japan:
    [Google Scholar]
  8. Jantzen E., Bryn K. 1985; Whole-cell and lipopolysaccharide fatty acids and sugars of gram-negative bacteria. Soc. Appl. Bacteriol. Tech. Ser. 20 145 171
    [Google Scholar]
  9. Kawahara K., Seydel U., Matsuura M., Danbara H., Rietschel E. T, Zahringer U. 1991; Chemical structure of glycosphingolipids isolated from Sphingomonas paucimobilis. FEBS Lett. 292 107 110
    [Google Scholar]
  10. Kawahara K., Uchida K., Aida K. 1982; Isolation of an unusual ‘lipid A’ type glycolipid from Pseudomonas paucimobilis. Biochim. Biophys. Acta 712 571 575
    [Google Scholar]
  11. Kawai F., Fukaya M., Tani Y., Ogata K. 1977; Identification of polyethylene glycols (PEGs)—assimilable bacteria and culture characteristics of PEG 6,000. J. Ferment. Technol. 55 429 534
    [Google Scholar]
  12. Kawai F., Kimura T., Tani Y., Yamada H. 1984; Involvement of polyethylene glycol (PEG)-oxidizing enzyme in the bacterial metabolism of PEG. Agric. Biol. Chem. 48 1349 1351
    [Google Scholar]
  13. Kawai F., Yamanaka H. 1986; Biodégradation of polyethylene glycol by symbiotic mixed culture (obligate mutualism). Arch. Microbiol. 146 125 129
    [Google Scholar]
  14. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 111 120
    [Google Scholar]
  15. Ludwig W., Mittenhuber G., Friedrich C. G. 1993; Transfer of Thiosphaera pantotropha to Paracoccus denitrificans. Int. J. Syst. Bacteriol. 43 363 367
    [Google Scholar]
  16. O’Neill S. L., Giordana R., Colbert A. M. E., Karr T. L. 1992; 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects. Proc. Natl. Acad. Sci. USA 89 2699 2702
    [Google Scholar]
  17. Oyaizu H., Komagata K. 1983; Grouping of Pseudomonas species on the basis of cellular fatty acid composition and the quinone system with special reference to the existence of 3-hydroxy fatty acid. J. Gen. Appl. Microbiol. 29 17 40
    [Google Scholar]
  18. Reiman D. A., Lepp P. W., Sadler K. N., Schmidt T. M. 1992; Phylogenetic relationships among the agent of bacillary angiomatosis, Bartonella bacilliformis, and other alpha-proteobacteria. Mol. Microbiol. 6 1801 1807
    [Google Scholar]
  19. Saiki R. K., Gelfand D. H., Stoffe S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich A. 1988; Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239 487 491
    [Google Scholar]
  20. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 406 425
    [Google Scholar]
  21. Schlesner H., Bartels C., Sittig M., Dorsch M., Stackebrandt E. 1990; Taxonomic and phylogenetic studies on a new taxon of budding, hyphal Proteobacteria, Hirschia baltica gen. nov., sp. nov. Int. J. Syst. Bacteriol. 40 443 451
    [Google Scholar]
  22. Shiba T. 1991; Roseobacter litoralis gen. nov., sp. nov., and Roseobacter denitrificans sp. nov., aerobic pink-pigmented bacteria which contain bacteriochlorophyll a. Syst. Appl. Microbiol. 14 140 145
    [Google Scholar]
  23. Shiba T., Simidu U. 1982; Erythrobacter longus gen. nov., sp. nov., an aerobic bacterium which contains bacteriochlorophyll a. Int. J. Syst. Bacteriol. 32 211 217
    [Google Scholar]
  24. Shimada K., Hayashi H., Tasumi M. 1985; Bacteriochlorophyll-protein complexes of aerobic bacteria, Erythrobacter longus and Erythrobacter species OChll4. Arch. Microbiol. 143 244 247
    [Google Scholar]
  25. Stackebrandt E., Fischer A., Roggentin T., Bomar U., Smida J. 1988; A phylogenetic survey of budding and/or prosthecate, non-phototrophic eubacteria: membership of Hyphomicrobium, Hyphomonas, Pedomicrobium, Filomicrobium, Caulobacter and “Dichotomicrobium” to the alpha-subdivision of purple nonsulfur bacteria. Arch. Microbiol. 42 270 274
    [Google Scholar]
  26. Stackebrandt E., Murry R. G. E., Truper H. G. 1988; Proteobacteria classis nov., a name for the phylogenetic taxon that includes the “purple bacteria and their relatives.”. Int. J. Syst. Bacteriol. 38 321 325
    [Google Scholar]
  27. Stahl D. A., Key R., Flesher B., Smit J. 1992; The phylogeny of marine and freshwater Caulobacter reflects their habitat. J. Bacteriol. 174 2193 2198
    [Google Scholar]
  28. Stal L. J., van Gemerden H., Krumbein W. E. 1984; The simultaneous assay of chlorophyll and bacteriochlorophyll in natural microbial communities. J. Microbiol. Methods 2 295 306
    [Google Scholar]
  29. Takeuchi M., Kawai F., Shimada Y., Yokota A. 1993; Taxonomic study of polyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas and new description of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov. Syst. Appl. Microbiol. 16 227 238
    [Google Scholar]
  30. Tsuji K., Tsien H. C., Hanson R. S., DePalma S. R., Scholtz R., LaRoche. 1990; 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs. J. Gen. Microbiol. 136 1 10
    [Google Scholar]
  31. van Bruggen A. H. C., Grogan R. G., Bogdanoff C. P., Waters C. M. 1988; Corky root of lettuce in California caused by a gram-negative bacterium. Phytopathology 78 1139 1145
    [Google Scholar]
  32. van Bruggen A. H. C., Jochimsen K. N., Brown P. 1990; Rhizomonas suberifaciens gen. nov., sp. nov., the causal agent of corky root of lettuce. Int. J. Syst. Bacteriol. 40 175 188
    [Google Scholar]
  33. van Bruggen A. H. C., Jochimsen K. N., Steinberger E. M., Segers P., Gillis M. 1993; Classification of Rhizomonas suberifaciens, unnamed Rhizomonas species, and Sphingomonas spp. in rRNA superfamily IV. Int. J. Syst. Bacteriol. 43 1 7
    [Google Scholar]
  34. Weisburg W. G., Barns S. M., Pelletier D. A., Lane D. J. 1991; 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173 697 703
    [Google Scholar]
  35. Weisburg W. G., Dobson M. E. R., Samuel J. E., Dasch G. A., Mallavia L. P., Baca O., Mandelco L., Sechrest J. E., Weiss E., Woese C. R. 1989; Phylogenetic diversity of the rickettsiae. J. Bacteriol. 171 4202 4206
    [Google Scholar]
  36. Weisburg W. G., Woese C. R., Dobson M. E., Weiss E. 1985; A common origin of rickettsiae and certain plant pathogens. Science 230 556 558
    [Google Scholar]
  37. Willems A., Collins M. D. 1992; Evidence for a close genealogical relationship between Afipia (the causal organism of cat scratch disease), Bradyrhizobium japonicum and Blastobacter denitrificans. FEMS Microbiol. Lett. 96 241 246
    [Google Scholar]
  38. Woese C. R. 1987; Bacterial evolution. Microbiol. Rev. 51 221 271
    [Google Scholar]
  39. Woese C. R., Maloy S., Mandelco L., Raj H. D. 1990; Phylogenetic placement of the Spirosomaceae. Syst. Appl. Microbiol. 13 19 23
    [Google Scholar]
  40. Woese C. R., Stackebrandt E., Weisburg W. G., Paster B. J., Madigan M. T., Fowler V. J., Hahn C. M., Blanz P., Gupta R., Nealson K. H., Fox G. E. 1984; The phylogeny of purple bacteria: the alpha subdivision. Syst. Appl. Microbiol. 5 315 326
    [Google Scholar]
  41. Yabuuchi E., Tanimura E., Ohyama A., Yano I., Yamamoto A. 1979; Flavobacterium devorans ATCC 10829, a strain of Pseudomonas paucimobilis. J. Gen. Appl. Microbiol. 25 95 107
    [Google Scholar]
  42. Yabuuchi E., Yano I., Oyaizu H., Hashimoto Y., Ezaki T., Yamamoto H. 1990; Proposals of Sphingomonas paucimobilis gen. nov. and comb, nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb, nov., and two genospecies of the genus Sphingomonas. Microbiol. Immunol. 34 99 119
    [Google Scholar]
  43. Yamamoto A., Yano I., Masui M., Yabuuchi E. 1978; Isolation of novel sphingoglycolipid containing glucuronic acid and 2-hydroxy fatty acid from Flavobacterium devorans ATCC 10829. J. Biochem. 83 1213 1216
    [Google Scholar]
  44. Yano I., Tomiyasu I., Yabuuchi E. 1982; Long chain base composition of strains of three species of Sphingobacterium gen. nov. FEMS Microbiol. Lett. 15 303 307
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/00207713-44-2-308
Loading
/content/journal/ijsem/10.1099/00207713-44-2-308
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error