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Abstract

Many microbial culture collections, like the UK’s National Collection of Type Cultures, add biological material such as bacterial strains to their holdings over time in a process known as accessioning. Here, we report on the 101 bacterial strains made available to scientists in the UK and globally by the National Collection of Type Cultures in 2023. Strains that are received are preserved, identified to species level and confirmed to be viable and pure. Genomic and metadata (where these are available) are made accessible via the UKHSA Culture Collections online catalogue. Commentary on the strains’ provenance and significance is presented, and wider trends in accessioning between 2017 and 2023 are examined. On average, ~101 strains were made available to the scientific community each year between 2017 and 2023. Fewer strains of veterinary provenance were made available than any other kind of strain, highlighting a need to accession more of these strains. However, there has been growth in the proportion of strains that are either antimicrobial resistant or type strains of novel microbial taxa, demonstrating that the NCTC program of accessioning helps support its function as a contemporary public health resource and repository for prokaryotic taxonomists.

  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
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2025-10-22
2025-11-10

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References

  1. UK Health Security Agency TP1 example reference strains for UK standards for microbiology investigations test procedures; 2025
  2. Oren A, Arahal DR, Göker M, Moore ERB, Rossello-Mora R et al. International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision). Int J Syst Evol Microbiol 2023; 73: [View Article]
    [Google Scholar]
  3. Turnbull JD, Dicks J, Gurung S, McGregor H, Alexander S et al. Notification list of bacterial strains made available by the United Kingdom national collection of type cultures in 2021. Microbiol Resour Announc 2022; 11:e0035722 [View Article] [PubMed]
    [Google Scholar]
  4. Turnbull JD, Dicks J, Adkin R, Dickinson A, Kaushal D et al. Notification of bacterial strains made available by the United Kingdom national collection of type cultures in 2022. Access Microbiol 2024; 6:000756.v3 [View Article] [PubMed]
    [Google Scholar]
  5. Steel KJ. Notes from the National Collection of Type Cultures. I. Mon Bull Minist Health Public Health Lab Serv 1963; 22:60–62 [PubMed]
    [Google Scholar]
  6. Steel KJ. Notes from the national collection of type cultures. 2. Mon Bull Minist Health Public Health Lab Serv 1964; 23:86–88 [PubMed]
    [Google Scholar]
  7. Lessel EF. Catalogue of the National Collection of Type Cultures-1972. Epidemiol Infect 1972; 70:797 [View Article]
    [Google Scholar]
  8. The national collection of type cultures: catalogue of species. Memo Med Res Counc 1958; 45:1–33 [PubMed]
    [Google Scholar]
  9. List of species maintained in the national collection of type cultures. Memo Med Res Counc 1951; 21:1–15 [PubMed]
    [Google Scholar]
  10. Newstead LL, Harris J, Goodbrand S, Varjonen K, Nuttall T et al. Staphylococcus caledonicus sp. nov. and Staphylococcus canis sp. nov. isolated from healthy domestic dogs. Int J Syst Evol Microbiol 2021; 71: [View Article]
    [Google Scholar]
  11. Gilroy R, Ravi A, Getino M, Pursley I, Horton DL et al. Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. PeerJ 2021; 9:e10941 [View Article] [PubMed]
    [Google Scholar]
  12. Mitchell M, Nguyen SV, Connor M, Fairley DJ, Donoghue O et al. Terrisporobacter hibernicus sp. nov., isolated from bovine faeces in Northern Ireland. Int J Syst Evol Microbiol 2023; 73: [View Article] [PubMed]
    [Google Scholar]
  13. Grant T-A, Jayakumar JM, López-Pérez M, Almagro-Moreno S. Vibrio floridensis sp. nov., a novel species closely related to the human pathogen Vibrio vulnificus isolated from a cyanobacterial bloom. Int J Syst Evol Microbiol 2023; 73: [View Article] [PubMed]
    [Google Scholar]
  14. Volokhov DV, Zagorodnyaya TA, Furtak VA, Nattanmai G, Randall L et al. Neisseria montereyensis sp. nov., isolated from oropharynx of California Sea Lion (Zalophus californianus): genomic, phylogenetic, and phenotypic study. Curr Microbiol 2023; 80:253 [View Article] [PubMed]
    [Google Scholar]
  15. Volokhov DV, Zagorodnyaya TA, Furtak VA, Nattanmai G, Randall L et al. Streptococcus sciuri sp. nov., Staphylococcus marylandisciuri sp. nov. and Staphylococcus americanisciuri sp. nov., isolated from faeces of eastern grey squirrel (Sciurus carolinensis). Int J Syst Evol Microbiol 2023; 73: [View Article]
    [Google Scholar]
  16. Adeleke AA, Fields BS, Benson RF, Daneshvar MI, Pruckler JM et al. Legionella drozanskii sp. nov., Legionella rowbothamii sp. nov. and Legionella fallonii sp. nov.: three unusual new Legionella species. Int J Syst Evol Microbiol 2001; 51:1151–1160 [View Article] [PubMed]
    [Google Scholar]
  17. Crespi S, Drašar V, Salvà-Serra F, Jaén-Luchoro D, Piñeiro-Iglesias B et al. Legionella maioricensis sp. nov., a new species isolated from the hot water distribution systems of a hospital and a shopping center during routine sampling. Int J Syst Evol Microbiol 2023; 73: [View Article] [PubMed]
    [Google Scholar]
  18. Mechergui A, Achour W, Giorgini D, Baaboura R, Taha MK et al. Molecular typing of Neisseria perflava clinical isolates. APMIS 2013; 121:843–847 [View Article] [PubMed]
    [Google Scholar]
  19. Vela AI, Casamayor A, Sánchez Del Rey V, Domínguez L, Fernández-Garayzábal JF. Streptococcus plurextorum sp. nov., isolated from pigs. Int J Syst Evol Microbiol 2009; 59:504–508 [View Article] [PubMed]
    [Google Scholar]
  20. Haas KN, Blanchard JL. Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa. Int J Syst Evol Microbiol 2020; 70:23–34 [View Article]
    [Google Scholar]
  21. Khan UB, Portal EAR, Sands K, Lo S, Chalker VJ et al. Genomic analysis reveals new integrative conjugal elements and transposons in GBS conferring antimicrobial resistance. Antibiotics 2023; 12:544 [View Article] [PubMed]
    [Google Scholar]
  22. Baker KS, Burnett E, McGregor H, Deheer-Graham A, Boinett C et al. The murray collection of pre-antibiotic era enterobacteriacae: a unique research resource. Genome Med 2015; 7:97 [View Article] [PubMed]
    [Google Scholar]
  23. Volokhov DV, Amselle M, Bodeis-Jones S, Delmonte P, Zhang S et al. Neisseria zalophi sp. nov., isolated from oral cavity of California sea lions (Zalophus californianus). Arch Microbiol 2018; 200:819–828 [View Article] [PubMed]
    [Google Scholar]
  24. Pallen MJ. Valid publication of names for bacterial species from the chicken gut. Int J Syst Evol Microbiol 2024; 74: [View Article]
    [Google Scholar]
  25. Oren A, Göker M. Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 74, part 7 of the IJSEM. Int J Syst Evol Microbiol 2024; 74: [View Article]
    [Google Scholar]
  26. Camus AC, Shewmaker PL, Mauel MJ, Wise DJ. Streptococcus ictaluri arthritis, osteolysis, myositis, and spinal meningitis in channel catfish broodstock. J Aquat Anim Health 2008; 20:54–62 [View Article] [PubMed]
    [Google Scholar]
  27. Shewmaker PL, Camus AC, Bailiff T, Steigerwalt AG, Morey RE et al. Streptococcus ictaluri sp. nov., isolated from Channel Catfish Ictalurus punctatus broodstock. Int J Syst Evol Microbiol 2007; 57:1603–1606 [View Article] [PubMed]
    [Google Scholar]
  28. Devriese LA, Vandamme P, Collins MD, Alvarez N, Pot B et al. Streptococcus pluranimalium sp. nov., from cattle and other animals. Int J Syst Bacteriol 1999; 49 Pt 3:1221–1226 [View Article] [PubMed]
    [Google Scholar]
  29. Sneath PHA, McGOWAN V, Skerman VBD. Approved lists of bacterial names. Int J Syst Bacteriol 1980; 30:225–420 [View Article]
    [Google Scholar]
  30. Aguirre M, Morrison D, Cookson BD, Gay FW, Collins MD. Phenotypic and phylogenetic characterization of some Gemella-like organisms from human infections: description of Dolosigranulum pigrum gen. nov., sp. nov. J Appl Bacteriol 1993; 75:608–612 [View Article] [PubMed]
    [Google Scholar]
  31. Lécuyer H, Audibert J, Bobigny A, Eckert C, Jannière-Nartey C et al. Dolosigranulum pigrum causing nosocomial pneumonia and septicemia. J Clin Microbiol 2007; 45:3474–3475 [View Article] [PubMed]
    [Google Scholar]
  32. Schanz CC, Layden MP, DeSimone DC, Stevens RW, Clement J. Native mitral valve infective endocarditis due to Dolosigranulum pigrum. IDCases 2023; 33:e01818 [View Article] [PubMed]
    [Google Scholar]
  33. Flores Ramos S, Brugger SD, Escapa IF, Skeete CA, Cotton SL et al. Genomic stability and genetic defense systems in Dolosigranulum pigrum, a candidate beneficial bacterium from the human microbiome. mSystems 2021; 6:e0042521 [View Article] [PubMed]
    [Google Scholar]
  34. Broda DM, Saul DJ, Bell RG, Musgrave DR. Clostridium algidixylanolyticum sp. nov., a psychrotolerant, xylan-degrading, spore-forming bacterium. Int J Syst Evol Microbiol 2000; 50 Pt 2:623–631 [View Article] [PubMed]
    [Google Scholar]
  35. Lynskey NN, Jauneikaite E, Li HK, Zhi X, Turner CE et al. Emergence of dominant toxigenic M1T1 Streptococcus pyogenes clone during increased scarlet fever activity in England: a population-based molecular epidemiological study. Lancet Infect Dis 2019; 19:1209–1218 [View Article] [PubMed]
    [Google Scholar]
  36. Vieira A, Wan Y, Ryan Y, Li HK, Guy RL et al. Rapid expansion and international spread of M1UK in the post-pandemic UK upsurge of Streptococcus pyogenes. Nat Commun 2024; 15:3916 [View Article] [PubMed]
    [Google Scholar]
  37. The European Committee on Antimicrobial Susceptibility Testing Routine and extended internal quality control for MIC determination and disk diffusion as recommended by EUCAST. Version 14.0 2024
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