Characterization of MultidrugResistant serogroup 19 Streptococcus pneumoniae isolated from healthy children below 5 years of age in Indonesia

References

1. Adegbola RA, DeAntonio R, Hill PC, Roca A, Usuf E et al. Carriage of Streptococcus pneumoniae and other respiratory bacterial pathogens in low and lower-middle income countries: a systematic review and meta-analysis. PLoS One 2014; 9:e103293 [View Article] [PubMed]
   [Google Scholar]
2. Brooks LRK, Mias GI. Streptococcus pneumoniae’s virulence and host immunity: aging, diagnostics, and prevention. Front Immunol 2018; 9:1366 [View Article] [PubMed]
   [Google Scholar]
3. Kim L, McGee L, Tomczyk S, Beall B. Biological and epidemiological features of antibiotic-resistant Streptococcus pneumoniae in pre- and post-conjugate vaccine eras: a United States perspective. Clin Microbiol Rev 2016; 29:525–552 [View Article] [PubMed]
   [Google Scholar]
4. WHO priority pathogens list for R&D of new antibiotics. n.d https://www.who.int/news-room/detail/27-02-2017-who-publishes-list-of-bacteria-for-which-new-antibiotics-are-urgently-needed accessed 14 May 2021
5. Cheng AC, Jenney AWJ. Macrolide resistance in pneumococci-is it relevant?. Pneumonia 2016; 8:10 [View Article] [PubMed]
   [Google Scholar]
6. Cornick JE, Harris SR, Parry CM, Moore MJ, Jassi C et al. Genomic identification of a novel co-trimoxazole resistance genotype and its prevalence amongst Streptococcus pneumoniae in Malawi. J Antimicrob Chemother 2014; 69:368–374 [View Article] [PubMed]
   [Google Scholar]
7. El Moujaber G, Osman M, Rafei R, Dabboussi F, Hamze M. Molecular mechanisms and epidemiology of resistance in Streptococcus pneumoniae in the Middle East region. J Med Microbiol 2017; 66:847–858 [View Article] [PubMed]
   [Google Scholar]
8. Arushothy R, Ahmad N, Amran F, Hashim R, Samsudin N et al. Pneumococcal serotype distribution and antibiotic susceptibility in Malaysia: a four-year study (2014-2017) on invasive paediatric isolates. Int J Infect Dis 2019; 80:129–133 [View Article] [PubMed]
   [Google Scholar]
9. Hadinegoro SR, Prayitno A, Khoeri MM, Djelantik IGG, Dewi NE et al. Nasopharyngeal carriage of Streptococcus pneumoniae in healthy children under five years old in Central Lombok Regency, Indonesia. Southeast Asian J Trop Med Public Health 2016; 47:485–493 [PubMed]
   [Google Scholar]
10. Safari D, Valentiya F, Salsabila K, Paramaiswari WT, Tafroji W et al. The prevalence of pilus islets in Streptococcus pneumoniae isolates from healthy children in Indonesia. Access Microbiol 2021; 3:acmi000184 [View Article] [PubMed]
    [Google Scholar]
11. Žemličková H, Mališová L, Španělová P, Jakubů V, Kozáková J et al. Molecular characterization of serogroup 19 Streptococcus pneumoniae in the Czech Republic in the post-vaccine era. J Med Microbiol 2018; 67:1003–1011 [View Article] [PubMed]
    [Google Scholar]
12. Salsabila K, Paramaiswari WT, Amalia H, Ruyani A, Tafroji W et al. Nasopharyngeal carriage rate, serotype distribution, and antimicrobial susceptibility profile of Streptococcus pneumoniae isolated from children under five years old in Kotabaru, South Kalimantan, Indonesia. J Microbiol Immunol Infect 2022; 55:482–488 [View Article] [PubMed]
    [Google Scholar]
13. Safari D, Daningrat WOD, Milucky JL, Khoeri MM, Paramaiswari WT et al. n.d. Nasopharyngeal carriage of Streptococcus Pneumoniae among children <5 years of age in Indonesia prior to Pneumococcal conjugate vaccine introduction. Under review
    [Google Scholar]
14. Daningrat WOD, Paramaiswari WT, Putri HFM, Aanensen D, Safari D. n.d. Prevalence, Serotype distribution and antimicrobial susceptibility profile of Streptococcus Pneumoniae in sea nomads children 5 years of age in Wakatobi, Southeast Sulawesi, Indonesia: a cross sectional study. Under review
    [Google Scholar]
15. Ko KS, Song J-H. Evolution of erythromycin-resistant Streptococcus pneumoniae from Asian countries that contains erm(B) and mef(A) genes. J Infect Dis 2004; 190:739–747 [View Article] [PubMed]
    [Google Scholar]
16. Malhotra-Kumar S, Lammens C, Piessens J, Goossens H. Multiplex PCR for simultaneous detection of macrolide and tetracycline resistance determinants in Streptococci. Antimicrob Agents Chemother 2005; 49:4798–4800 [View Article]
    [Google Scholar]
17. Wilén M, Buwembo W, Sendagire H, Kironde F, Swedberg G. Cotrimoxazole resistance of Streptococcus pneumoniae and commensal streptococci from Kampala, Uganda. Scand J Infect Dis 2009; 41:113–121 [View Article] [PubMed]
    [Google Scholar]
18. Khodaei F, Ahmadi A, Sayahfar S, Irajian G, Talebi M. The dominance of pilus Islet 1 in pneumococcal isolates collected from patients and healthy individuals. Jundishapur J Microbiol 2016; 9:e30470 [View Article] [PubMed]
    [Google Scholar]
19. Basset A, Trzcinski K, Hermos C, O’Brien KL, Reid R et al. Association of the pneumococcal pilus with certain capsular serotypes but not with increased virulence. J Clin Microbiol 2007; 45:1684–1689 [View Article] [PubMed]
    [Google Scholar]
20. Vermee Q, Cohen R, Hays C, Varon E, Bonacorsi S et al. Biofilm production by Haemophilus influenzae and Streptococcus pneumoniae isolated from the nasopharynx of children with acute otitis media. BMC Infect Dis 2019; 19:44 [View Article] [PubMed]
    [Google Scholar]
21. Kadurugamuwa JL, Sin L, Albert E, Yu J, Francis K et al. Direct continuous method for monitoring biofilm infection in a mouse model. Infect Immun 2003; 71:882–890 [View Article]
    [Google Scholar]
22. Enright MC, Spratt BG. A multilocus sequence typing scheme for Streptococcus pneumoniae: identification of clones associated with serious invasive disease. Microbiology 1998; 144:3049–3060 [View Article]
    [Google Scholar]
23. Jolley KA, Bray JE, Maiden MCJ. Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications. Wellcome Open Res 2018; 3:124 [View Article] [PubMed]
    [Google Scholar]
24. Fallah F, Tabatabaei SR, Yousefi M, Hashemi A, Nazari-Alam A et al. Association of erythromycin resistance with mefA and ermB genes among clinical isolates of Streptococcus pneumoniae in Tehran, Iran. mjima 2021 [View Article]
    [Google Scholar]
25. Gonzales BE, Mercado EH, Pinedo-Bardales M, Hinostroza N, Campos F et al. Increase of macrolide-resistance in Streptococcus pneumoniae strains after the introduction of the 13-valent pneumococcal conjugate vaccine in Lima, Peru. Front Cell Infect Microbiol 2022; 12:866186 [View Article] [PubMed]
    [Google Scholar]
26. Ousmane S, Diallo BA, Ouedraogo R. Genetic determinants of tetracycline resistance in clinical Streptococcus pneumoniae serotype 1 isolates from Niger. Antibiotics 2018; 7:19 [View Article] [PubMed]
    [Google Scholar]
27. Akdoğan Kittana FN, Mustak IB, Hascelik G, Saricam S, Gurler N et al. Erythromycin-resistant Streptococcus pneumoniae: phenotypes, genotypes, transposons and pneumococcal vaccine coverage rates. J Med Microbiol 2019; 68:874–881 [View Article]
    [Google Scholar]
28. Goldberg E, Bishara J. Contemporary unconventional clinical use of co-trimoxazole. Clin Microbiol Infect 2012; 18:8–17 [View Article] [PubMed]
    [Google Scholar]
29. Hadi U, Duerink DO, Lestari ES, Nagelkerke NJ, Werter S et al. Survey of antibiotic use of individuals visiting public healthcare facilities in Indonesia. Int J Infect Dis 2008; 12:622–629 [View Article] [PubMed]
    [Google Scholar]
30. Haasum Y, Ström K, Wehelie R, Luna V, Roberts MC et al. Amino acid repetitions in the dihydropteroate synthase of Streptococcus pneumoniae lead to sulfonamide resistance with limited effects on substrate K(m). Antimicrob Agents Chemother 2001; 45:805–809 [View Article] [PubMed]
    [Google Scholar]
31. Huovinen P. Resistance to trimethoprim-sulfamethoxazole. Clin Infect Dis 2001; 32:1608–1614 [View Article] [PubMed]
    [Google Scholar]
32. Padayachee T, Klugman KP. Novel expansions of the gene encoding dihydropteroate synthase in trimethoprim-sulfamethoxazole-resistant Streptococcus pneumoniae. Antimicrob Agents Chemother 1999; 43:2225–2230 [View Article]
    [Google Scholar]
33. Manyahi J, Moyo S, Aboud S, Langeland N, Blomberg B. High rate of antimicrobial resistance and multiple mutations in the dihydrofolate reductase gene among Streptococcus pneumoniae isolated from HIV-infected adults in a community setting in Tanzania. J Glob Antimicrob Resist 2020; 22:749–753 [View Article] [PubMed]
    [Google Scholar]
34. Maskell JP, Sefton AM, Hall LM. Multiple mutations modulate the function of dihydrofolate reductase in trimethoprim-resistant Streptococcus pneumoniae. Antimicrob Agents Chemother 2001; 45:1104–1108 [View Article] [PubMed]
    [Google Scholar]
35. Adrian PV, Klugman KP. Mutations in the dihydrofolate reductase gene of trimethoprim-resistant isolates of Streptococcus pneumoniae. Antimicrob Agents Chemother 1997; 41:2406–2413 [View Article]
    [Google Scholar]
36. Bagnoli F, Moschioni M, Donati C, Dimitrovska V, Ferlenghi I et al. A second pilus type in Streptococcus pneumoniae is prevalent in emerging serotypes and mediates adhesion to host cells. J Bacteriol 2008; 190:5480–5492 [View Article] [PubMed]
    [Google Scholar]
37. Zähner D, Gudlavalleti A, Stephens DS. Increase in pilus islet 2-encoded pili among Streptococcus pneumoniae isolates, Atlanta, Georgia, USA. Emerg Infect Dis 2010; 16:955–962 [View Article] [PubMed]
    [Google Scholar]
38. Yadav MK, Chae S-W, Song J-J. In vitro Streptococcus pneumoniae biofilm formation and in vivo middle ear mucosal biofilm in a rat model of acute otitis induced by S. pneumoniae. Clin Exp Otorhinolaryngol 2012; 5:139–144 [View Article] [PubMed]
    [Google Scholar]
39. Zemlickova H, Jakubu V, Fridrichova M, Malisova L, Martin M et al. The association of pili with the emergence and replacement of the major antibiotic resistant pneumococcal clones. J Microbiol Immunol Infect 2020; 53:690–695 [View Article] [PubMed]
    [Google Scholar]
40. Choi EH, Kim SH, Eun BW, Kim SJ, Kim NH et al. Streptococcus pneumoniae serotype 19A in children, South Korea. Emerg Infect Dis 2008; 14:275–281 [View Article] [PubMed]
    [Google Scholar]
41. Zhao C, Li Z, Zhang F, Zhang X, Ji P et al. Serotype distribution and antibiotic resistance of Streptococcus pneumoniae isolates from 17 Chinese cities from 2011 to 2016. BMC Infect Dis 2017; 17:804 [View Article] [PubMed]
    [Google Scholar]
42. Dzaraly ND, Mohd Desa MN, Muthanna A, Masri SN, Taib NM et al. Antimicrobial susceptibility, serotype distribution, virulence profile and molecular typing of piliated clinical isolates of pneumococci from east coast, Peninsular Malaysia. Sci Rep 2021; 11:8220 [View Article] [PubMed]
    [Google Scholar]