1887

Abstract

A nitrogen-fixing bacterium, designated strain Be17, was isolated from rhizosphere soil of planted in Beijing Botanical Garden, PR China. Phylogenetic analyses based on a segment of the gene sequence and a full-length 16S rRNA gene sequence revealed that strain Be17 was a member of the genus . High levels of 16S rRNA gene sequence similarity were found between strain Be17 and RSA19 (97.9 %), LMG 24727 (97.8 %), CECT 7330 (96.2 %) and DSM 13188 (96.1 %), respectively. Levels of 16S rRNA gene sequence similarity between strain Be17 and the type strains of other recognized members of the genus were below 96.0 %. However, the DNA–DNA hybridization values between strain Be17 and RSA19, LMG 24727 and CECT 7330 were 47.9 %, 38.7 % and 37.5 %, respectively. The DNA G+C content of strain Be17 was 52.9 mol%. The major fatty acid component of strain Be17 was anteiso-branched C (30.92 %). The major isoprenoid quinone was MK-7. The cell-wall peptidoglycan contained -diaminopimelic acid as the diagnostic diamino acid. On the basis of its phenotypic characteristics, 16S rRNA gene sequences, DNA G+C content, DNA–DNA relatedness, chemotaxonomic properties and gene sequence, strain Be17 represents a nitrogen-fixing strain of a novel species of the genus , for which the name sp. nov. is proposed. The type strain is Be17 ( = CGMCC 1.10239 = DSM 23019).

Funding
This study was supported by the:
  • National ‘973’ Project (Award 2010CB126504)
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2011-06-01
2024-04-19
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References

  1. Ash C., Farrow J. A. E., Wallbanks S., Collins M. D. 1991; Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13:202–206 [View Article]
    [Google Scholar]
  2. Ash C., Priest F. G., Collins M. D. 1993; Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus . Antonie van Leeuwenhoek 64:253–260 [View Article][PubMed]
    [Google Scholar]
  3. Ash C., Priest F. G., Collins M. D. 1994; Paenibacillus gen. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 51. Int J Syst Bacteriol 44:852 [CrossRef]
    [Google Scholar]
  4. Beneduzi A., Costa P. B., Parma M., Melo I. S., Bodanese-Zanettini M. H., Passaglia L. M. 2010; Paenibacillus riograndensis sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Triticum aestivum . Int J Syst Evol Microbiol 60:128–133 [View Article][PubMed]
    [Google Scholar]
  5. Berge O., Guinebretière M. H., Achouak W., Normand P., Heulin T. 2002; Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. Int J Syst Evol Microbiol 52:607–616[PubMed]
    [Google Scholar]
  6. Chun J., Lee J. H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y. W. 2007; EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261 [View Article][PubMed]
    [Google Scholar]
  7. Coelho M. R. R., Carneiro N. P., Marriel I. E., Seldin L. 2009; Molecular detection of nifH gene-containing Paenibacillus in the rhizosphere of sorghum (Sorghum bicolor) sown in Cerrado soil. Lett Appl Microbiol 48:611–617 [View Article][PubMed]
    [Google Scholar]
  8. Collins M. D. 1985; Analysis of isoprenoid quinones. Methods Microbiol 18:329–366 [View Article]
    [Google Scholar]
  9. Collins M. D., Goodfellow M., Minnikin D. E. 1980; Fatty acid, isoprenoid quinone and polar lipid composition in the classification of Curtobacterium and related taxa. J Gen Microbiol 118:29–37[PubMed]
    [Google Scholar]
  10. Cowan S. T., Steel K. J. 1965 Manual for the Identification of Medical Bacteria London: Cambridge University Press;
    [Google Scholar]
  11. Ding Y., Wang J., Liu Y., Chen S. 2005; Isolation and identification of nitrogen-fixing bacilli from plant rhizospheres in Beijing region. J Appl Microbiol 99:1271–1281 [View Article][PubMed]
    [Google Scholar]
  12. Elo S., Suominen I., Kämpfer P., Juhanoja J., Salkinoja-Salonen M., Haahtela K. 2001; Paenibacillus borealis sp. nov., a nitrogen-fixing species isolated from spruce forest humus in Finland. Int J Syst Evol Microbiol 51:535–545[PubMed]
    [Google Scholar]
  13. Gao J. L., Sun J. G., Li Y., Wang E. T., Chen W. X. 1994; Numerical taxonomy and DNA relatedness of tropical rhizobia isolated from Hainan Province, China. Int J Syst Bacteriol 44:151–158 [View Article]
    [Google Scholar]
  14. Gordon R. E., Haynes W. C., Pang C. H.-N. 1973 The Genus Bacillus (US Department of Agriculture Handbook no. 427) Washington, DC: Agricultural Research Service;
    [Google Scholar]
  15. Hong Y. Y., Ma Y. C., Zhou Y. G., Gao F., Liu H. C., Chen S. F. 2009; Paenibacillus sonchi sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Sonchus oleraceus . Int J Syst Evol Microbiol 59:2656–2661 [View Article][PubMed]
    [Google Scholar]
  16. Komagata K., Suzuki K. 1987; Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–207 [View Article]
    [Google Scholar]
  17. Kumar S., Tamura K., Nei M. 2004; mega3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150–163 [View Article][PubMed]
    [Google Scholar]
  18. Ma Y. C., Chen S. F. 2008; Paenibacillus forsythiae sp. nov., a nitrogen-fixing species isolated from rhizosphere soil of Forsythia mira . Int J Syst Evol Microbiol 58:319–323 [View Article][PubMed]
    [Google Scholar]
  19. Ma Y., Xia Z., Liu X., Chen S. 2007; Paenibacillus sabinae sp. nov., a nitrogen-fixing species isolated from the rhizosphere soils of shrubs. Int J Syst Evol Microbiol 57:6–11 [View Article][PubMed]
    [Google Scholar]
  20. Minnikin D. E., Collins M. D., Goodfellow M. 1979; Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47:87–95 [CrossRef]
    [Google Scholar]
  21. Priest F. G., Goodfellow M., Todd C. 1981; The genus Bacillus: a numerical analysis. In The Aerobic Endospore-Forming Bacteria: Classification and Identification pp. 91–103 Edited by Berkeley R. C. W., Goodfellow M. London: Academic Press;
    [Google Scholar]
  22. Rhodes-Roberts M. 1981; The taxonomy of some nitrogen-fixing Bacillus species with special reference to nitrogen fixation. In The Aerobic Endospore-Forming Bacteria: Classification and Identification pp. 315–335 Edited by Berkeley R. C. W., Goodfellow M. London: Academic Press;
    [Google Scholar]
  23. Saha P., Mondal A. K., Mayilraj S., Krishnamurthi S., Bhattacharya A., Chakrabarti T. 2005; Paenibacillus assamensis sp. nov., a novel bacterium isolated from a warm spring in Assam, India. Int J Syst Evol Microbiol 55:2577–2581 [View Article][PubMed]
    [Google Scholar]
  24. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
  25. Sasser M., Kunitsky C., Jackoway G., Ezzell J. W., Teska J. D., Harper B., Parker S., Barden D., Blair H. et al. 2005; Identification of Bacillus anthracis from culture using gas chromatographic analysis of fatty acid methyl esters. J AOAC Int 88:178–181[PubMed]
    [Google Scholar]
  26. Schleifer K. H., Kandler O. 1972; Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477[PubMed]
    [Google Scholar]
  27. Shida O., Takagi H., Kadowaki K., Komagata K. 1996; Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov.. Int J Syst Bacteriol 46:939–946 [View Article][PubMed]
    [Google Scholar]
  28. Shida O., Takagi H., Kadowaki K., Nakamura L. K., Komagata K. 1997; Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus . Int J Syst Bacteriol 47:289–298 [View Article][PubMed]
    [Google Scholar]
  29. Shirling E. B., Gottlieb D. 1966; Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 [View Article]
    [Google Scholar]
  30. Suominen I., Spröer C., Kämpfer P., Rainey F. A., Lounatmaa K., Salkinoja-Salonen M. 2003; Paenibacillus stellifer sp. nov., a cyclodextrin-producing species isolated from paperboard. Int J Syst Evol Microbiol 53:1369–1374 [View Article][PubMed]
    [Google Scholar]
  31. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [View Article]
    [Google Scholar]
  32. Von Bredemann G. 1908; Untersuchungen uber die Variation und das Stickstoffbindungsvermogen des Bacillus asterosporus A. M., ausgefuhrt an 27 Stammen verschiedener Herkunft. Zentralblatt Bakteriol Parasitenkd Infekt Hyg 2:44–89
    [Google Scholar]
  33. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. et al. 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [View Article]
    [Google Scholar]
  34. Yanagi M., Yamasato K. 1993; Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiol Lett 107:115–120 [View Article][PubMed]
    [Google Scholar]
  35. Ziemke F., Höfle M. G., Lalucat J., Rosselló-Mora R. 1998; Reclassification of Shewanella putrefaciens Owen’s genomic group II as Shewanella baltica sp. nov.. Int J Syst Bacteriol 48:179–186 [View Article][PubMed]
    [Google Scholar]
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